Rice genomics: current status of genome sequencing - PubMed (original) (raw)
Review
. 2001:236:28-38; discussion 38-41.
doi: 10.1002/9780470515778.ch4.
Affiliations
- PMID: 11387985
- DOI: 10.1002/9780470515778.ch4
Review
Rice genomics: current status of genome sequencing
T Matsumoto et al. Novartis Found Symp. 2001.
Abstract
Since its establishment in 1991, the Rice Genome Research Program (RGP) has produced some basic tools for rice genome analysis, including a cDNA catalogue, a genetic linkage map and a yeast artificial chromosome (YAC)-based physical map. For the further development of rice genomics, RGP launched in 1998 an international collaborative project on rice genome sequencing. A P1-derived artificial chromosome (PAC)-based, sequence-ready physical map has been constructed using the PCR markers from cDNA sequences (expressed sequence tag [EST] markers). Selected PAC clones with 100-150 kb inserts from chromosomes 1 and 6 have been subjected to shotgun sequencing. The assembled genomic sequences, after predicting the gene-coding region, have been published both through a public database and through our website. As of January 2000, 1.9 Mb from 13 PAC clones were published. Future prospects for understanding rice genomic information at the nucleotide level are discussed.
Similar articles
- From mapping to sequencing, post-sequencing and beyond.
Sasaki T, Matsumoto T, Antonio BA, Nagamura Y. Sasaki T, et al. Plant Cell Physiol. 2005 Jan;46(1):3-13. doi: 10.1093/pcp/pci503. Epub 2005 Jan 19. Plant Cell Physiol. 2005. PMID: 15659433 Review. - INE: a rice genome database with an integrated map view.
Sakata K, Antonio BA, Mukai Y, Nagasaki H, Sakai Y, Makino K, Sasaki T. Sakata K, et al. Nucleic Acids Res. 2000 Jan 1;28(1):97-101. doi: 10.1093/nar/28.1.97. Nucleic Acids Res. 2000. PMID: 10592192 Free PMC article. - International Rice Genome Sequencing Project: the effort to completely sequence the rice genome.
Sasaki T, Burr B. Sasaki T, et al. Curr Opin Plant Biol. 2000 Apr;3(2):138-41. doi: 10.1016/s1369-5266(99)00047-3. Curr Opin Plant Biol. 2000. PMID: 10712951 Review. - Physical mapping of rice chromosomes 8 and 9 with YAC clones.
Antonio BA, Emoto M, Wu J, Ashikawa I, Umehara Y, Kurata N, Sasaki T. Antonio BA, et al. DNA Res. 1996 Dec 31;3(6):393-400. doi: 10.1093/dnares/3.6.393. DNA Res. 1996. PMID: 9097041 - A fine physical map of the rice chromosome 5.
Cheng CH, Chung MC, Liu SM, Chen SK, Kao FY, Lin SJ, Hsiao SH, Tseng IC, Hsing YI, Wu HP, Chen CS, Shaw JF, Wu J, Matsumoto T, Sasaki T, Chen HH, Chow TY. Cheng CH, et al. Mol Genet Genomics. 2005 Nov;274(4):337-45. doi: 10.1007/s00438-005-0039-y. Epub 2005 Oct 28. Mol Genet Genomics. 2005. PMID: 16261349
Cited by
- Molecular biologist's guide to proteomics.
Graves PR, Haystead TA. Graves PR, et al. Microbiol Mol Biol Rev. 2002 Mar;66(1):39-63; table of contents. doi: 10.1128/MMBR.66.1.39-63.2002. Microbiol Mol Biol Rev. 2002. PMID: 11875127 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Research Materials
Miscellaneous