Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers - PubMed (original) (raw)
Dense genetic linkage maps of three Populus species (Populus deltoides, P. nigra and P. trichocarpa) based on AFLP and microsatellite markers
M T Cervera et al. Genetics. 2001 Jun.
Abstract
Populus deltoides, P. nigra, and P. trichocarpa are the most important species for poplar breeding programs worldwide. In addition, Populus has become a model for fundamental research on trees. Linkage maps were constructed for these three species by analyzing progeny of two controlled crosses sharing the same female parent, Populus deltoides cv. S9-2 x P. nigra cv. Ghoy and P. deltoides cv. S9-2 x P. trichocarpa cv. V24. The two-way pseudotestcross mapping strategy was used to construct the maps. Amplified fragment length polymorphism (AFLP) markers that segregated 1:1 were used to form the four parental maps. Microsatellites and sequence-tagged sites were used to align homoeologous groups between the maps and to merge linkage groups within the individual maps. Linkage analysis and alignment of the homoeologous groups resulted in 566 markers distributed over 19 groups for P. deltoides covering 86% of the genome, 339 markers distributed over 19 groups for P. trichocarpa covering 73%, and 369 markers distributed over 28 groups for P. nigra covering 61%. Several tests for randomness showed that the AFLP markers were randomly distributed over the genome.
Similar articles
- Molecular linkage maps of the Populus genome.
Yin T, Zhang X, Huang M, Wang M, Zhuge Q, Tu S, Zhu LH, Wu R. Yin T, et al. Genome. 2002 Jun;45(3):541-55. doi: 10.1139/g02-013. Genome. 2002. PMID: 12033623 - De novo SNP discovery and genetic linkage mapping in poplar using restriction site associated DNA and whole-genome sequencing technologies.
Mousavi M, Tong C, Liu F, Tao S, Wu J, Li H, Shi J. Mousavi M, et al. BMC Genomics. 2016 Aug 18;17:656. doi: 10.1186/s12864-016-3003-9. BMC Genomics. 2016. PMID: 27538483 Free PMC article. - QTLs for Woolly Poplar Aphid (Phloeomyzus passerinii L.) Resistance Detected in an Inter-Specific Populus deltoides x P. nigra Mapping Population.
Carletti G, Carra A, Allegro G, Vietto L, Desiderio F, Bagnaresi P, Gianinetti A, Cattivelli L, Valè G, Nervo G. Carletti G, et al. PLoS One. 2016 Mar 29;11(3):e0152569. doi: 10.1371/journal.pone.0152569. eCollection 2016. PLoS One. 2016. PMID: 27022954 Free PMC article. - Comparative genome mapping among Populus adenopoda, P. alba, P. deltoides, P. euramericana and P. trichocarpa.
Wang Y, Zhang B, Sun X, Tan B, Xu LA, Huang M, Wang M. Wang Y, et al. Genes Genet Syst. 2011;86(4):257-68. doi: 10.1266/ggs.86.257. Genes Genet Syst. 2011. PMID: 22214594
Cited by
- Construction of a high density genetic linkage map to define the locus conferring seedlessness from Mukaku Kishu mandarin.
Kumar K, Yu Q, Bhatia D, Honsho C, Gmitter FG Jr. Kumar K, et al. Front Plant Sci. 2023 Feb 14;14:1087023. doi: 10.3389/fpls.2023.1087023. eCollection 2023. Front Plant Sci. 2023. PMID: 36875618 Free PMC article. - The response of the poplar transcriptome to wounding and subsequent infection by a viral pathogen.
Smith CM, Rodriguez-Buey M, Karlsson J, Campbell MM. Smith CM, et al. New Phytol. 2004 Oct;164(1):123-136. doi: 10.1111/j.1469-8137.2004.01151.x. New Phytol. 2004. PMID: 33873491 - Poplar genomics comes of age.
Strauss SH, Martin FM. Strauss SH, et al. New Phytol. 2004 Oct;164(1):1-4. doi: 10.1111/j.1469-8137.2004.01179.x. New Phytol. 2004. PMID: 33873475 No abstract available. - Genetic and physical mapping of Melampsora rust resistance genes in Populus and characterization of linkage disequilibrium and flanking genomic sequence.
Yin TM, DiFazio SP, Gunter LE, Jawdy SS, Boerjan W, Tuskan GA. Yin TM, et al. New Phytol. 2004 Oct;164(1):95-105. doi: 10.1111/j.1469-8137.2004.01161.x. New Phytol. 2004. PMID: 33873470 - Reintroduced Native Populus nigra in Restored Floodplain Reduces Spread of Exotic Poplar Species.
Vanden Broeck A, Cox K, Van Braeckel A, Neyrinck S, De Regge N, Van Looy K. Vanden Broeck A, et al. Front Plant Sci. 2021 Jan 15;11:580653. doi: 10.3389/fpls.2020.580653. eCollection 2020. Front Plant Sci. 2021. PMID: 33519841 Free PMC article.
References
- Proc Natl Acad Sci U S A. 1991 Nov 1;88(21):9828-32 - PubMed
- Genetics. 1999 Jan;151(1):321-30 - PubMed
- Genetics. 1988 Dec;120(4):947-58 - PubMed
- Genetics. 2000 Feb;154(2):837-45 - PubMed
- Genetics. 1989 Jan;121(1):185-99 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources