Predicting three-dimensional genome structure from transcriptional activity - PubMed (original) (raw)

Predicting three-dimensional genome structure from transcriptional activity

Peter R Cook. Nat Genet. 2002 Nov.

No abstract available

PubMed Disclaimer

Similar articles

• Molecular basis of transcriptional silencing in budding yeast.
  Chen L, Widom J. Chen L, et al. Biochem Cell Biol. 2004 Aug;82(4):413-8. doi: 10.1139/o04-035. Biochem Cell Biol. 2004. PMID: 15284893 Review.
• Activation of transcription initiation from a stable RNA promoter by a Fis protein-mediated DNA structural transmission mechanism.
  Opel ML, Aeling KA, Holmes WM, Johnson RC, Benham CJ, Hatfield GW. Opel ML, et al. Mol Microbiol. 2004 Jul;53(2):665-74. doi: 10.1111/j.1365-2958.2004.04147.x. Mol Microbiol. 2004. PMID: 15228542
• Improving protein folding efficiency by directed evolution using the GFP folding reporter.
  Waldo GS. Waldo GS. Methods Mol Biol. 2003;230:343-59. doi: 10.1385/1-59259-396-8:343. Methods Mol Biol. 2003. PMID: 12824594 No abstract available.
• Biochemistry. Completing the view of transcriptional regulation.
  von Hippel PH. von Hippel PH. Science. 2004 Jul 16;305(5682):350-2. doi: 10.1126/science.1101270. Science. 2004. PMID: 15256661 No abstract available.
• The paradox of functional heterochromatin.
  Dimitri P, Corradini N, Rossi F, Vernì F. Dimitri P, et al. Bioessays. 2005 Jan;27(1):29-41. doi: 10.1002/bies.20158. Bioessays. 2005. PMID: 15612038 Review.

Cited by

• Bacterial nucleoid is a riddle wrapped in a mystery inside an enigma.
  Kuzminov A. Kuzminov A. J Bacteriol. 2024 Mar 21;206(3):e0021123. doi: 10.1128/jb.00211-23. Epub 2024 Feb 15. J Bacteriol. 2024. PMID: 38358278 Free PMC article. Review.
• Phase separation of RNA-binding protein promotes polymerase binding and transcription.
  Shao W, Bi X, Pan Y, Gao B, Wu J, Yin Y, Liu Z, Peng M, Zhang W, Jiang X, Ren W, Xu Y, Wu Z, Wang K, Zhan G, Lu JY, Han X, Li T, Wang J, Li G, Deng H, Li B, Shen X. Shao W, et al. Nat Chem Biol. 2022 Jan;18(1):70-80. doi: 10.1038/s41589-021-00904-5. Epub 2021 Dec 16. Nat Chem Biol. 2022. PMID: 34916619
• Liquid-Liquid Phase Separation in Chromatin.
  Rippe K. Rippe K. Cold Spring Harb Perspect Biol. 2022 Feb 1;14(2):a040683. doi: 10.1101/cshperspect.a040683. Cold Spring Harb Perspect Biol. 2022. PMID: 34127447 Free PMC article. Review.
• Homotypic clustering of L1 and B1/Alu repeats compartmentalizes the 3D genome.
  Lu JY, Chang L, Li T, Wang T, Yin Y, Zhan G, Han X, Zhang K, Tao Y, Percharde M, Wang L, Peng Q, Yan P, Zhang H, Bi X, Shao W, Hong Y, Wu Z, Ma R, Wang P, Li W, Zhang J, Chang Z, Hou Y, Zhu B, Ramalho-Santos M, Li P, Xie W, Na J, Sun Y, Shen X. Lu JY, et al. Cell Res. 2021 Jun;31(6):613-630. doi: 10.1038/s41422-020-00466-6. Epub 2021 Jan 29. Cell Res. 2021. PMID: 33514913 Free PMC article.
• The Rabl configuration limits topological entanglement of chromosomes in budding yeast.
  Pouokam M, Cruz B, Burgess S, Segal MR, Vazquez M, Arsuaga J. Pouokam M, et al. Sci Rep. 2019 May 1;9(1):6795. doi: 10.1038/s41598-019-42967-4. Sci Rep. 2019. PMID: 31043625 Free PMC article.

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • Nature Publishing Group