GOBASE--a database of mitochondrial and chloroplast information - PubMed (original) (raw)

GOBASE--a database of mitochondrial and chloroplast information

Emmet A O'Brien et al. Nucleic Acids Res. 2003.

Abstract

GOBASE is a relational database containing integrated sequence, RNA secondary structure and biochemical and taxonomic information about organelles. GOBASE release 6 (summer 2002) contains over 130 000 mitochondrial sequences, an increase of 37% over the previous release, and more than 30 000 chloroplast sequences in a new auxiliary database. To handle this flood of new data, we have designed and implemented GOpop, a Java system for population and verification of the database. We have also implemented a more powerful and flexible user interface using the PHP programming language. http://megasun.bch.umontreal.ca/gobase/gobase.html.

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Figures

Figure 1

Example GOdigger interface page. This is the RNA search page. Parameters for the search are divided into biological features and database-related properties.

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