New allele frequency database: http://www.allelefrequencies.net - PubMed (original) (raw)
New allele frequency database: http://www.allelefrequencies.net
D Middleton et al. Tissue Antigens. 2003 May.
Abstract
A new website (http://www.allelefrequencies.net) has been compiled to execute the frequency of alleles at various polymorphic regions of different populations in the field of histocompatibility and immunogenetics. Data for HLA alleles has been added but this will be extended to include frequency data of polymorphisms in other immunogenetic regions, e.g. cytokines, KIR receptors, MIC.
Similar articles
- Allele Frequency Net Database.
Gonzalez-Galarza FF, McCabe A, Melo Dos Santos EJ, Takeshita L, Ghattaoraya G, Jones AR, Middleton D. Gonzalez-Galarza FF, et al. Methods Mol Biol. 2018;1802:49-62. doi: 10.1007/978-1-4939-8546-3_4. Methods Mol Biol. 2018. PMID: 29858801 - 16(th) IHIW: extending the number of resources and bioinformatics analysis for the investigation of HLA rare alleles.
Gonzalez-Galarza FF, Mack SJ, Hollenbach J, Fernandez-Vina M, Setterholm M, Kempenich J, Marsh SG, Jones AR, Middleton D; HLA Rare Allele Consortium. Gonzalez-Galarza FF, et al. Int J Immunogenet. 2013 Feb;40(1):60-5. doi: 10.1111/iji.12030. Epub 2012 Dec 1. Int J Immunogenet. 2013. PMID: 23198982 - Allele frequency net 2015 update: new features for HLA epitopes, KIR and disease and HLA adverse drug reaction associations.
González-Galarza FF, Takeshita LY, Santos EJ, Kempson F, Maia MH, da Silva AL, Teles e Silva AL, Ghattaoraya GS, Alfirevic A, Jones AR, Middleton D. González-Galarza FF, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D784-8. doi: 10.1093/nar/gku1166. Epub 2014 Nov 20. Nucleic Acids Res. 2015. PMID: 25414323 Free PMC article. - A snapshot of human leukocyte antigen (HLA) diversity using data from the Allele Frequency Net Database.
Gonzalez-Galarza FF, McCabe A, Melo Dos Santos EJ, Jones AR, Middleton D. Gonzalez-Galarza FF, et al. Hum Immunol. 2021 Jul;82(7):496-504. doi: 10.1016/j.humimm.2020.10.004. Epub 2020 Oct 21. Hum Immunol. 2021. PMID: 33755549 Review. - The HLA-net GENE[RATE] pipeline for effective HLA data analysis and its application to 145 population samples from Europe and neighbouring areas.
Nunes JM, Buhler S, Roessli D, Sanchez-Mazas A; HLA-net 2013 collaboration. Nunes JM, et al. Tissue Antigens. 2014 May;83(5):307-23. doi: 10.1111/tan.12356. Tissue Antigens. 2014. PMID: 24738646 Review.
Cited by
- Regression of renal cell carcinoma by T cell receptor-engineered T cells targeting a human endogenous retrovirus.
Barisic S, Brahmbhatt EM, Cherkasova E, Spear TT, Savani U, Pierre S, Scurti GM, Chen L, Igboko M, Nadal R, Zeng G, Parry G, Stroncek DF, Highfill S, Dalheim AV, Reger R, Nishimura MI, Childs RW. Barisic S, et al. J Immunother Cancer. 2024 Sep 11;12(9):e009147. doi: 10.1136/jitc-2024-009147. J Immunother Cancer. 2024. PMID: 39266213 Free PMC article. - Structural insights into immune escape at killer T cell epitope by SARS-CoV-2 Spike Y453F variants.
Deng S, Xu Z, Wang M, Hu J, Liu Z, Zhu F, Zheng P, Kombe Kombe AJ, Zhang H, Wu S, Jin T. Deng S, et al. J Biol Chem. 2024 Aug;300(8):107563. doi: 10.1016/j.jbc.2024.107563. Epub 2024 Jul 11. J Biol Chem. 2024. PMID: 39002680 Free PMC article. - Geographic EBV variants confound disease-specific variant interpretation and predict variable immune therapy responses.
Briercheck EL, Ravishankar S, Ahmed EH, Carías Alvarado CC, Barrios Menéndez JC, Silva O, Solórzano-Ortiz E, Siliézar Tala MM, Stevenson P, Xu Y, Wohns AW, Enriquez-Vera D, Barrionuevo C, Yu SC, Freud AG, Oakes C, Weigel C, Weinstock DM, Klimaszewski HL, Ngankeu A, Mutalima N, Samayoa-Reyes G, Newton R, Rochford R, Valvert F, Natkunam Y, Shustov A, Baiocchi RA, Warren EH. Briercheck EL, et al. Blood Adv. 2024 Jul 23;8(14):3731-3744. doi: 10.1182/bloodadvances.2023012461. Blood Adv. 2024. PMID: 38815238 Free PMC article. - Identification and affinity enhancement of T-cell receptor targeting a KRASG12V cancer neoantigen.
Zhang M, Xu W, Luo L, Guan F, Wang X, Zhu P, Zhang J, Zhou X, Wang F, Ye S. Zhang M, et al. Commun Biol. 2024 Apr 29;7(1):512. doi: 10.1038/s42003-024-06209-2. Commun Biol. 2024. PMID: 38684865 Free PMC article. - Transient TCR-based T cell therapy in a patient with advanced treatment-resistant MSI-high colorectal cancer.
Maggadottir SM, Dueland S, Mensali N, Hamre H, Andresen PA, Myhre MR, Juul HV, Bigalke I, Lundby M, Hønnåshagen TK, Sæbøe-Larssen S, Josefsen D, Hagtvedt T, Wälchli S, Kvalheim G, Inderberg EM. Maggadottir SM, et al. Mol Ther. 2024 Jun 5;32(6):2021-2029. doi: 10.1016/j.ymthe.2024.04.009. Epub 2024 Apr 6. Mol Ther. 2024. PMID: 38582964
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Research Materials