Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure - PubMed (original) (raw)

Affiliations

• PMID: 12836690

Introns in, introns out in plant gene families: a genomic approach of the dynamics of gene structure

Alain Lecharny et al. J Struct Funct Genomics. 2003.

Abstract

Gene duplication is considered to be a source of genetic information for the creation of new functions. The Arabidopsis thaliana genome sequence revealed that a majority of plant genes belong to gene families. Regarding the problem of genes involved in the genesis of novel organs or functions during evolution, the reconstitution of the evolutionary history of gene families is of critical importance. A comparison of the intron/exon gene structure may provide clues for the understanding of the evolutionary mechanisms underlying the genesis of gene families. An extensive study of A. thaliana genome showed that families of duplicated genes may be organized according to the number and/or density of intron and the diversity in gene structure. In this paper, we propose a genomic classification of several A. thaliana gene families based on introns in an evolutionary perspective.

PubMed Disclaimer

Similar articles

• Prevalence of intron gain over intron loss in the evolution of paralogous gene families.
  Babenko VN, Rogozin IB, Mekhedov SL, Koonin EV. Babenko VN, et al. Nucleic Acids Res. 2004 Jul 14;32(12):3724-33. doi: 10.1093/nar/gkh686. Print 2004. Nucleic Acids Res. 2004. PMID: 15254274 Free PMC article.
• Unique genes in plants: specificities and conserved features throughout evolution.
  Armisén D, Lecharny A, Aubourg S. Armisén D, et al. BMC Evol Biol. 2008 Oct 10;8:280. doi: 10.1186/1471-2148-8-280. BMC Evol Biol. 2008. PMID: 18847470 Free PMC article.
• Extensive divergence in alternative splicing patterns after gene and genome duplication during the evolutionary history of Arabidopsis.
  Zhang PG, Huang SZ, Pin AL, Adams KL. Zhang PG, et al. Mol Biol Evol. 2010 Jul;27(7):1686-97. doi: 10.1093/molbev/msq054. Epub 2010 Feb 25. Mol Biol Evol. 2010. PMID: 20185454
• Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.
  Feller A, Machemer K, Braun EL, Grotewold E. Feller A, et al. Plant J. 2011 Apr;66(1):94-116. doi: 10.1111/j.1365-313X.2010.04459.x. Plant J. 2011. PMID: 21443626 Review.
• Evolution of plant microRNA gene families.
  Li A, Mao L. Li A, et al. Cell Res. 2007 Mar;17(3):212-8. doi: 10.1038/sj.cr.7310113. Cell Res. 2007. PMID: 17130846 Review.

Cited by

• Genome-wide identification and expression analysis of the WRKY gene family in Rhododendron henanense subsp. lingbaoense.
  Guo X, Yan X, Li Y. Guo X, et al. PeerJ. 2024 May 29;12:e17435. doi: 10.7717/peerj.17435. eCollection 2024. PeerJ. 2024. PMID: 38827309 Free PMC article.
• Genome-Wide Identification and Expression Analysis of the Sucrose Synthase Gene Family in Sweet Potato and Its Two Diploid Relatives.
  Jiang Z, Zhang H, Gao S, Zhai H, He S, Zhao N, Liu Q. Jiang Z, et al. Int J Mol Sci. 2023 Aug 6;24(15):12493. doi: 10.3390/ijms241512493. Int J Mol Sci. 2023. PMID: 37569874 Free PMC article.
• Insight into the bZIP gene family in Lagenaria siceraria: Genome and transcriptome analysis to understand gene diversification in Cucurbitaceae and the roles of LsbZIP gene expression and function under cold stress.
  Wang J, Wang Y, Wu X, Wang B, Lu Z, Zhong L, Li G, Wu X. Wang J, et al. Front Plant Sci. 2023 Feb 17;13:1128007. doi: 10.3389/fpls.2022.1128007. eCollection 2022. Front Plant Sci. 2023. PMID: 36874919 Free PMC article.
• Genomic identification of cotton SAC genes branded ovule and stress-related key genes in Gossypium hirsutum.
  Shuya M, Le L, Huiyun S, Yu G, Yujun L, Qanmber G. Shuya M, et al. Front Plant Sci. 2023 Feb 3;14:1123745. doi: 10.3389/fpls.2023.1123745. eCollection 2023. Front Plant Sci. 2023. PMID: 36818879 Free PMC article.
• Genome-Wide Analysis of the Rab Gene Family in Melilotus albus Reveals Their Role in Salt Tolerance.
  Zhang C, Wu F, Yan Q, Duan Z, Wang S, Ao B, Han Y, Zhang J. Zhang C, et al. Int J Mol Sci. 2022 Dec 21;24(1):126. doi: 10.3390/ijms24010126. Int J Mol Sci. 2022. PMID: 36613571 Free PMC article.

References

1. 1. Nature. 2000 Dec 14;408(6814):820-2 - PubMed
2. 1. Gene. 1998 Mar 16;209(1-2):201-10 - PubMed
3. 1. Gene. 1998 Jun 8;212(2):249-57 - PubMed
4. 1. Science. 1998 Dec 11;282(5396):2012-8 - PubMed
5. 1. EMBO J. 2001 Oct 1;20(19):5354-60 - PubMed

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Ovid Technologies, Inc.