The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids - PubMed (original) (raw)
Comparative Study
The nucleic acid database. A comprehensive relational database of three-dimensional structures of nucleic acids
H M Berman et al. Biophys J. 1992 Sep.
No abstract available
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References
- Nucleic Acids Res. 1980 May 24;8(10):2307-29 - PubMed
- Science. 1982 Apr 30;216(4545):475-85 - PubMed
- J Mol Biol. 1977 May 25;112(3):535-42 - PubMed
- Protein Sci. 1992 Jan;1(1):3-9 - PubMed
- J Biol Chem. 1991 May 15;266(14):8861-83 - PubMed
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