GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images - PubMed (original) (raw)

GelScape: a web-based server for interactively annotating, manipulating, comparing and archiving 1D and 2D gel images

Nelson Young et al. Bioinformatics. 2004.

Abstract

GelScape is a web-based tool that permits facile, interactive annotation, comparison, manipulation and storage of protein gel images. It uses Java applet-servlet technology to allow rapid, remote image handling and image processing in a platform-independent manner. It supports many of the features found in commercial, stand-alone gel analysis software including spot annotation, spot integration, gel warping, image resizing, HTML image mapping, image overlaying as well as the storage of gel image and gel annotation data in compliance with Federated Gel Database requirements.

PubMed Disclaimer

Similar articles

• PATIKAweb: a Web interface for analyzing biological pathways through advanced querying and visualization.
  Dogrusoz U, Erson EZ, Giral E, Demir E, Babur O, Cetintas A, Colak R. Dogrusoz U, et al. Bioinformatics. 2006 Feb 1;22(3):374-5. doi: 10.1093/bioinformatics/bti776. Epub 2005 Nov 15. Bioinformatics. 2006. PMID: 16287939
• Exploratory data analysis groupware for qualitative and quantitative electrophoretic gel analysis over the Internet-WebGel.
  Lemkin PF, Myrick JM, Lakshmanan Y, Shue MJ, Patrick JL, Hornbeck PV, Thornwal GC, Partin AW. Lemkin PF, et al. Electrophoresis. 1999 Dec;20(18):3492-507. doi: 10.1002/(SICI)1522-2683(19991201)20:18<3492::AID-ELPS3492>3.0.CO;2-V. Electrophoresis. 1999. PMID: 10612275
• Designing for social data analysis.
  Wattenberg M, Kriss J. Wattenberg M, et al. IEEE Trans Vis Comput Graph. 2006 Jul-Aug;12(4):549-57. doi: 10.1109/TVCG.2006.65. IEEE Trans Vis Comput Graph. 2006. PMID: 16805263
• A review of content-based image retrieval systems in medical applications-clinical benefits and future directions.
  Müller H, Michoux N, Bandon D, Geissbuhler A. Müller H, et al. Int J Med Inform. 2004 Feb;73(1):1-23. doi: 10.1016/j.ijmedinf.2003.11.024. Int J Med Inform. 2004. PMID: 15036075 Review.
• Flicker image comparison of 2-D gel images for putative protein identification using the 2DWG meta-database.
  Lemkin PF, Thornwall G. Lemkin PF, et al. Mol Biotechnol. 1999 Sep;12(2):159-72. doi: 10.1385/MB:12:2:159. Mol Biotechnol. 1999. PMID: 10596373 Review.

Cited by

• Bioimage informatics: a new area of engineering biology.
  Peng H. Peng H. Bioinformatics. 2008 Sep 1;24(17):1827-36. doi: 10.1093/bioinformatics/btn346. Epub 2008 Jul 4. Bioinformatics. 2008. PMID: 18603566 Free PMC article. Review.

MeSH terms

LinkOut - more resources

• Full Text Sources

  • Ovid Technologies, Inc.
  • Silverchair Information Systems