Estimating the impact of prehistoric admixture on the genome of Europeans - PubMed (original) (raw)
. 2004 Jul;21(7):1361-72.
doi: 10.1093/molbev/msh135. Epub 2004 Mar 24.
Affiliations
- PMID: 15044595
- DOI: 10.1093/molbev/msh135
Estimating the impact of prehistoric admixture on the genome of Europeans
Isabelle Dupanloup et al. Mol Biol Evol. 2004 Jul.
Abstract
We inferred past admixture processes in the European population from genetic diversity at eight loci, including autosomal, mitochondrial and Y-linked polymorphisms. Admixture coefficients were estimated from multilocus data, assuming that most current populations can be regarded as the result of a hybridization process among four or less potential parental populations. Two main components are apparent in the Europeans' genome, presumably corresponding to the contributions of the first, Paleolithic Europeans, and of the early, Neolithic farmers dispersing from the Near East. In addition, only a small fraction of the European alleles seems to come from North Africa, and a fourth component reflecting gene flow from Northern Asia is largely restricted to the northeast of the continent. The estimated Near Eastern contribution decreases as one moves from east to west, in agreement with the predictions of a model in which (Neolithic) immigrants from the Near East contributed a large share of the alleles in the genome of current Europeans. Several tests suggest that probable departures from the admixture models, due to factors such as choice of the putative parental populations and more complex demographic scenarios, may have affected our main estimates only to a limited extent.
Similar articles
- Genome-wide diversity in the levant reveals recent structuring by culture.
Haber M, Gauguier D, Youhanna S, Patterson N, Moorjani P, Botigué LR, Platt DE, Matisoo-Smith E, Soria-Hernanz DF, Wells RS, Bertranpetit J, Tyler-Smith C, Comas D, Zalloua PA. Haber M, et al. PLoS Genet. 2013;9(2):e1003316. doi: 10.1371/journal.pgen.1003316. Epub 2013 Feb 28. PLoS Genet. 2013. PMID: 23468648 Free PMC article. - Decoding a highly mixed Kazakh genome.
Seidualy M, Blazyte A, Jeon S, Bhak Y, Jeon Y, Kim J, Eriksson A, Bolser D, Yoon C, Manica A, Lee S, Bhak J. Seidualy M, et al. Hum Genet. 2020 May;139(5):557-568. doi: 10.1007/s00439-020-02132-8. Epub 2020 Feb 19. Hum Genet. 2020. PMID: 32076829 Free PMC article. - A Transient Pulse of Genetic Admixture from the Crusaders in the Near East Identified from Ancient Genome Sequences.
Haber M, Doumet-Serhal C, Scheib CL, Xue Y, Mikulski R, Martiniano R, Fischer-Genz B, Schutkowski H, Kivisild T, Tyler-Smith C. Haber M, et al. Am J Hum Genet. 2019 May 2;104(5):977-984. doi: 10.1016/j.ajhg.2019.03.015. Epub 2019 Apr 18. Am J Hum Genet. 2019. PMID: 31006515 Free PMC article. - Population structure and infectious disease risk in southern Africa.
Uren C, Möller M, van Helden PD, Henn BM, Hoal EG. Uren C, et al. Mol Genet Genomics. 2017 Jun;292(3):499-509. doi: 10.1007/s00438-017-1296-2. Epub 2017 Feb 22. Mol Genet Genomics. 2017. PMID: 28229227 Review. - The evolutionary history of human populations in Europe.
Lazaridis I. Lazaridis I. Curr Opin Genet Dev. 2018 Dec;53:21-27. doi: 10.1016/j.gde.2018.06.007. Epub 2018 Jun 28. Curr Opin Genet Dev. 2018. PMID: 29960127 Review.
Cited by
- Bayesian analysis of an admixture model with mutations and arbitrarily linked markers.
Excoffier L, Estoup A, Cornuet JM. Excoffier L, et al. Genetics. 2005 Mar;169(3):1727-38. doi: 10.1534/genetics.104.036236. Epub 2005 Jan 16. Genetics. 2005. PMID: 15654099 Free PMC article. - Evolution of lactase persistence: an example of human niche construction.
Gerbault P, Liebert A, Itan Y, Powell A, Currat M, Burger J, Swallow DM, Thomas MG. Gerbault P, et al. Philos Trans R Soc Lond B Biol Sci. 2011 Mar 27;366(1566):863-77. doi: 10.1098/rstb.2010.0268. Philos Trans R Soc Lond B Biol Sci. 2011. PMID: 21320900 Free PMC article. - A test of the influence of continental axes of orientation on patterns of human gene flow.
Ramachandran S, Rosenberg NA. Ramachandran S, et al. Am J Phys Anthropol. 2011 Dec;146(4):515-29. doi: 10.1002/ajpa.21533. Epub 2011 Sep 13. Am J Phys Anthropol. 2011. PMID: 21913175 Free PMC article. - Between the Baltic and Danubian Worlds: the genetic affinities of a Middle Neolithic population from central Poland.
Lorkiewicz W, Płoszaj T, Jędrychowska-Dańska K, Żądzińska E, Strapagiel D, Haduch E, Szczepanek A, Grygiel R, Witas HW. Lorkiewicz W, et al. PLoS One. 2015 Feb 25;10(2):e0118316. doi: 10.1371/journal.pone.0118316. eCollection 2015. PLoS One. 2015. PMID: 25714361 Free PMC article. - Coalescent-based method for learning parameters of admixture events from large-scale genetic variation data.
Tsai MC, Blelloch G, Ravi R, Schwartz R. Tsai MC, et al. IEEE/ACM Trans Comput Biol Bioinform. 2013 Sep-Oct;10(5):1137-49. doi: 10.1109/tcbb.2013.98. IEEE/ACM Trans Comput Biol Bioinform. 2013. PMID: 23959633 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Miscellaneous