The ENCODE (ENCyclopedia Of DNA Elements) Project - PubMed (original) (raw)

• Age, sex, and cell type-resolved hypothalamic gene expression across the pubertal transition in mice.
  Sokolowski DJ, Hou H, Yuki KE, Roy A, Chan C, Choi W, Faykoo-Martinez M, Hudson M, Corre C, Uusküla-Reimand L, Goldenberg A, Palmert MR, Wilson MD. Sokolowski DJ, et al. Biol Sex Differ. 2024 Oct 24;15(1):83. doi: 10.1186/s13293-024-00661-9. Biol Sex Differ. 2024. PMID: 39449090 Free PMC article.
• 3C-based methods to detect long-range chromatin interactions.
  Wei G, Zhao K. Wei G, et al. Front Biol (Beijing). 2011 Feb;6(1):76-81. doi: 10.1007/s11515-011-0980-6. Epub 2011 Jan 29. Front Biol (Beijing). 2011. PMID: 39398263 Free PMC article.
• Untargeted CUT&Tag and BG4 CUT&Tag are both enriched at G-quadruplexes and accessible chromatin.
  Thompson M, Byrd A. Thompson M, et al. bioRxiv [Preprint]. 2024 Sep 29:2024.09.26.615263. doi: 10.1101/2024.09.26.615263. bioRxiv. 2024. PMID: 39386625 Free PMC article. Preprint.
• Cell-type-specific mapping of enhancers and target genes from single-cell multimodal data.
  Su C, Lee D, Jin P, Zhang J. Su C, et al. bioRxiv [Preprint]. 2024 Sep 26:2024.09.24.614814. doi: 10.1101/2024.09.24.614814. bioRxiv. 2024. PMID: 39386519 Free PMC article. Preprint.
• Regulatory elements in SEM1-DLX5-DLX6 (7q21.3) locus contribute to genetic control of coronal nonsyndromic craniosynostosis and bone density-related traits.
  Nicoletti P, Zafer S, Matok L, Irron I, Patrick M, Haklai R, Evangelista JE, Marino GB, Ma'ayan A, Sewda A, Holmes G, Britton SR, Lee WJ, Wu M, Ru Y, Arnaud E, Botto L, Brody LC, Byren JC, Caggana M, Carmichael SL, Cilliers D, Conway K, Crawford K, Cuellar A, Di Rocco F, Engel M, Fearon J, Feldkamp ML, Finnell R, Fisher S, Freudlsperger C, Garcia-Fructuoso G, Hagge R, Heuzé Y, Harshbarger RJ, Hobbs C, Howley M, Jenkins MM, Johnson D, Justice CM, Kane A, Kay D, Gosain AK, Langlois P, Legal-Mallet L, Lin AE, Mills JL, Morton JEV, Noons P, Olshan A, Persing J, Phipps JM, Redett R, Reefhuis J, Rizk E, Samson TD, Shaw GM, Sicko R, Smith N, Staffenberg D, Stoler J, Sweeney E, Taub PJ, Timberlake AT, Topczewska J, Wall SA, Wilson AF, Wilson LC, Boyadjiev SA, Wilkie AOM, Richtsmeier JT, Jabs EW, Romitti PA, Karasik D, Birnbaum RY, Peter I. Nicoletti P, et al. Genet Med Open. 2024;2:101851. doi: 10.1016/j.gimo.2024.101851. Epub 2024 May 17. Genet Med Open. 2024. PMID: 39345948 Free PMC article.