DDBJ in collaboration with mass-sequencing teams on annotation - PubMed (original) (raw)

DDBJ in collaboration with mass-sequencing teams on annotation

Y Tateno et al. Nucleic Acids Res. 2005.

Abstract

In the past year, we at DDBJ (DNA Data Bank of Japan; http://www.ddbj.nig.ac.jp) collected and released 1,066,084 entries or 718,072,425 bases including the whole chromosome 22 of chimpanzee, the whole-genome shotgun sequences of silkworm and various others. On the other hand, we hosted workshops for human full-length cDNA annotation and participated in jamborees of mouse full-length cDNA annotation. The annotated data are made public at DDBJ. We are also in collaboration with a RIKEN team to accept and release the CAGE (Cap Analysis Gene Expression) data under a new category, MGA (Mass Sequences for Genome Annotation). The data will be useful for studying gene expression control in many aspects.

PubMed Disclaimer

Figures

Figure 1

Figure 1

New home page of DDBJ.

Figure 2

Figure 2

Recent trends in data submission. Successions of data submissions in the past four years are shown for the top nine species. H. s., Homo sapiens; M. m., Mus musculus; R. n., Rattus norvegicus; D. r., Danio rerio; Z. m., Zea mays; D. m., Drosophila melanogaster; O. s., Oryza sativa; G. g., Gallus gallus; A. t., Arabidopsis thaliana.

References

    1. Kawai J., Shinagawa,A., Shibata,K., Yoshino,M., Itoh,M., Ishii,Y., Arakawa,T., Hara,A., Fukunishi,Y., Konno,H. et al. (2001) Functional annotation of a full-length mouse cDNA collection. Nature, 409, 685–690. - PubMed
    1. Imanishi T., Itoh,T., Suzuki,Y., O'Donovan,C., Fukuchi,S., Koyanagi,K.O., Barrero,R.A., Tamura,T., Yamaguchi-Kabata,Y. et al. (2004) Integrative annotation of 21,037 human genes validated by full-length cDNA clones. PLoS Biol., 2, 856–875. - PMC - PubMed
    1. Watanabe H., Fujiyama,A., Hattori,M., Taylor,T.D., Toyoda,A., Kuroki,Y., Noguchi,H., BenKahla,A., Lehrach,H., Sudbrak,R. et al. (2004) DNA sequence and comparative analysis of chimpanzee chromosome 22. Nature, 429, 382–388. - PubMed
    1. Chen F.C. and Li,W.-H. (2001) Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees. Am. J. Hum. Genet., 68, 444–456. - PMC - PubMed
    1. Mita K., Kasahara,M., Sasaki,S., Nagayasu,Y., Yamada,T., Kanamori,H., Namiki,N., Kitagawa,M., Yamashita,H., Yasukochi,Y. et al. (2004) The genome sequence of silkworm, Bombyx mori. DNA Res., 11, 27–35. - PubMed

MeSH terms

LinkOut - more resources