Integr8 and Genome Reviews: integrated views of complete genomes and proteomes - PubMed (original) (raw)

. 2005 Jan 1;33(Database issue):D297-302.

doi: 10.1093/nar/gki039.

Lawrence Bower, Lorna Morris, Alan Horne, Robert Petryszak, Carola Kanz, Alexander Kanapin, Ujjwal Das, Karine Michoud, Isabelle Phan, Alexandre Gattiker, Tamara Kulikova, Nadeem Faruque, Karyn Duggan, Peter Mclaren, Britt Reimholz, Laurent Duret, Simon Penel, Ingmar Reuter, Rolf Apweiler

Affiliations

• PMID: 15608201
• PMCID: PMC539993
• DOI: 10.1093/nar/gki039

Integr8 and Genome Reviews: integrated views of complete genomes and proteomes

Paul Kersey et al. Nucleic Acids Res. 2005.

Abstract

Integr8 is a new web portal for exploring the biology of organisms with completely deciphered genomes. For over 190 species, Integr8 provides access to general information, recent publications, and a detailed statistical overview of the genome and proteome of the organism. The preparation of this analysis is supported through Genome Reviews, a new database of bacterial and archaeal DNA sequences in which annotation has been upgraded (compared to the original submission) through the integration of data from many sources, including the EMBL Nucleotide Sequence Database, the UniProt Knowledgebase, InterPro, CluSTr, GOA and HOGENOM. Integr8 also allows the users to customize their own interactive analysis, and to download both customized and prepared datasets for their own use. Integr8 is available at http://www.ebi.ac.uk/integr8.

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Figures

Figure 1

Incorporation of new data into Genome Reviews. The figure shows a portion of Genome Reviews entry AL009126_GR from release 7.0. Data in boldface have been added to the corresponding portion of the original submission to the EMBL/GenBank/DDBJ nucleotide sequence databases.

Figure 2

Genome Statistics for the fission yeast Schizosaccharomyces pombe, as represented in the Integr8 browser.

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