Causal protein-signaling networks derived from multiparameter single-cell data - PubMed (original) (raw)

Markov Field network model of multi-modal data predicts effects of immune system perturbations on intravenous BCG vaccination in macaques.

Wang S, Myers AJ, Irvine EB, Wang C, Maiello P, Rodgers MA, Tomko J, Kracinovsky K, Borish HJ, Chao MC, Mugahid D, Darrah PA, Seder RA, Roederer M, Scanga CA, Lin PL, Alter G, Fortune SM, Flynn JL, Lauffenburger DA. Wang S, et al. bioRxiv [Preprint]. 2024 Oct 30:2024.04.13.589359. doi: 10.1101/2024.04.13.589359. bioRxiv. 2024. PMID: 39554028 Free PMC article. Updated. Preprint.

How to Build the Virtual Cell with Artificial Intelligence: Priorities and Opportunities.

Bunne C, Roohani Y, Rosen Y, Gupta A, Zhang X, Roed M, Alexandrov T, AlQuraishi M, Brennan P, Burkhardt DB, Califano A, Cool J, Dernburg AF, Ewing K, Fox EB, Haury M, Herr AE, Horvitz E, Hsu PD, Jain V, Johnson GR, Kalil T, Kelley DR, Kelley SO, Kreshuk A, Mitchison T, Otte S, Shendure J, Sofroniew NJ, Theis F, Theodoris CV, Upadhyayula S, Valer M, Wang B, Xing E, Yeung-Levy S, Zitnik M, Karaletsos T, Regev A, Lundberg E, Leskovec J, Quake SR. Bunne C, et al. ArXiv [Preprint]. 2024 Oct 14:arXiv:2409.11654v2. ArXiv. 2024. PMID: 39398201 Free PMC article. Updated. Preprint.