A molecular revolution in the study of intestinal microflora - PubMed (original) (raw)
A molecular revolution in the study of intestinal microflora
E Furrie. Gut. 2006 Feb.
Abstract
Bacterial colonisers of the colon comprise several hundred bacterial species that live in a complex ecosystem. Study of this complex ecosystem has been carried out, until recently, by traditional culture techniques with biochemical methods to identify organisms. The development of molecular techniques to investigate ecological microbial communities has provided the microbiologist with a vast array of new techniques to investigate human intestinal microflora. Metagenomics, the science of biological diversity, combines the use of molecular biology and genetics to identify and characterise genetic material from complex microbial environments. The combination of metagenomics and subsequent quantitation of each identified species using molecular techniques allows the relatively rapid analysis of whole bacterial populations in human health and disease.
Conflict of interest statement
Conflict of interest: None declared.
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References
- Finegold S M, Sutter V L, Mathisen G E. Normal indigenous intestinal flora. In: Hentges DJ, ed. Human intestinal microflora in health and disease. New York: Academic press, 19833–31.
- Macfarlane S, Macfarlane G T. Bacterial diversity in the human gut. Adv Appl Microbiol 200454261–289. - PubMed
- Darfeuille‐Michaud A. Adherent‐invasive Escherichia coli: a putative new E. coli pathotype associated with Crohn's disease. Int J Med Microbiol 2002292185–193. - PubMed
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