Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited - PubMed (original) (raw)
doi: 10.1038/nchembio759. Epub 2005 Dec 25.
Affiliations
- PMID: 16415859
- DOI: 10.1038/nchembio759
Ever-fluctuating single enzyme molecules: Michaelis-Menten equation revisited
Brian P English et al. Nat Chem Biol. 2006 Feb.
Erratum in
- Nat Chem Biol. 2006 Mar;2(3):168
Abstract
Enzymes are biological catalysts vital to life processes and have attracted century-long investigation. The classic Michaelis-Menten mechanism provides a highly satisfactory description of catalytic activities for large ensembles of enzyme molecules. Here we tested the Michaelis-Menten equation at the single-molecule level. We monitored long time traces of enzymatic turnovers for individual beta-galactosidase molecules by detecting one fluorescent product at a time. A molecular memory phenomenon arises at high substrate concentrations, characterized by clusters of turnover events separated by periods of low activity. Such memory lasts for decades of timescales ranging from milliseconds to seconds owing to the presence of interconverting conformers with broadly distributed lifetimes. We proved that the Michaelis-Menten equation still holds even for a fluctuating single enzyme, but bears a different microscopic interpretation.
Comment in
- Michaelis-Menten is dead, long live Michaelis-Menten!
Walter NG. Walter NG. Nat Chem Biol. 2006 Feb;2(2):66-7. doi: 10.1038/nchembio0206-66. Nat Chem Biol. 2006. PMID: 16421583 No abstract available.
Similar articles
- Single-molecule Michaelis-Menten equations.
Kou SC, Cherayil BJ, Min W, English BP, Xie XS. Kou SC, et al. J Phys Chem B. 2005 Oct 20;109(41):19068-81. doi: 10.1021/jp051490q. J Phys Chem B. 2005. PMID: 16853459 - Dynamic disorder in single-molecule Michaelis-Menten kinetics: the reaction-diffusion formalism in the Wilemski-Fixman approximation.
Chaudhury S, Cherayil BJ. Chaudhury S, et al. J Chem Phys. 2007 Sep 14;127(10):105103. doi: 10.1063/1.2768059. J Chem Phys. 2007. PMID: 17867782 - Fast mixing and reaction initiation control of single-enzyme kinetics in confined volumes.
Jung SY, Liu Y, Collier CP. Jung SY, et al. Langmuir. 2008 May 6;24(9):4439-42. doi: 10.1021/la800053e. Epub 2008 Mar 25. Langmuir. 2008. PMID: 18361535 - Fluctuating enzymes: lessons from single-molecule studies.
Min W, English BP, Luo G, Cherayil BJ, Kou SC, Xie XS. Min W, et al. Acc Chem Res. 2005 Dec;38(12):923-31. doi: 10.1021/ar040133f. Acc Chem Res. 2005. PMID: 16359164 Review. - A note on the kinetics of enzyme action: a decomposition that highlights thermodynamic effects.
Noor E, Flamholz A, Liebermeister W, Bar-Even A, Milo R. Noor E, et al. FEBS Lett. 2013 Sep 2;587(17):2772-7. doi: 10.1016/j.febslet.2013.07.028. Epub 2013 Jul 23. FEBS Lett. 2013. PMID: 23892083 Review.
Cited by
- Network structure and fluctuation data improve inference of metabolic interaction strengths with the inverse Jacobian.
Li J, Weckwerth W, Waldherr S. Li J, et al. NPJ Syst Biol Appl. 2024 Nov 23;10(1):137. doi: 10.1038/s41540-024-00457-y. NPJ Syst Biol Appl. 2024. PMID: 39580513 Free PMC article. - Real-Time Tracking of Vesicles in Living Cells Reveals That Tau-Hyperphosphorylation Suppresses Unidirectional Transport by Motor Proteins.
Lee E, Kim D, Song YH, Shin K, Song S, Lee M, Goh Y, Lim MH, Kim JH, Sung J, Lee KT. Lee E, et al. Chem Biomed Imaging. 2024 Apr 23;2(5):362-373. doi: 10.1021/cbmi.4c00016. eCollection 2024 May 27. Chem Biomed Imaging. 2024. PMID: 39474119 Free PMC article. - Memory effects of transcription regulator-DNA interactions in bacteria.
Jung W, Chen TY, Santiago AG, Chen P. Jung W, et al. Proc Natl Acad Sci U S A. 2024 Oct 8;121(41):e2407647121. doi: 10.1073/pnas.2407647121. Epub 2024 Oct 3. Proc Natl Acad Sci U S A. 2024. PMID: 39361642 - Watching a Single Enzyme at Work Using Single-Molecule Surface-Enhanced Raman Scattering and DNA Origami-Based Plasmonic Antennas.
Kanehira Y, Kogikoski S Jr, Titov E, Tapio K, Mostafa A, Bald I. Kanehira Y, et al. ACS Nano. 2024 Jul 29;18(31):20191-200. doi: 10.1021/acsnano.4c03384. Online ahead of print. ACS Nano. 2024. PMID: 39074854 Free PMC article. - Analysis of the Behavior of Deep Eutectic Solvents upon Addition of Water: Its Effects over a Catalytic Reaction.
Campodónico PR, Alarcón-Espósito J, Alcázar JJ, Olivares B, Suárez-Rozas C. Campodónico PR, et al. Molecules. 2024 Jul 12;29(14):3296. doi: 10.3390/molecules29143296. Molecules. 2024. PMID: 39064875 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources