5'-end formation of yeast 5.8SL rRNA is an endonucleolytic event - PubMed (original) (raw)
. 2006 Jun 30;345(2):796-802.
doi: 10.1016/j.bbrc.2006.04.166. Epub 2006 May 5.
Affiliations
- PMID: 16701559
- DOI: 10.1016/j.bbrc.2006.04.166
5'-end formation of yeast 5.8SL rRNA is an endonucleolytic event
Alex W Faber et al. Biochem Biophys Res Commun. 2006.
Abstract
Like most eukaryotes, Saccharomyces cerevisiae cells contain a minor 5.8SL rRNA that, relative to the major 5.8SS species, carries several extra nucleotides at the 5'-end. The two species are produced by alternative pathways that differ in the events removing the 3'-terminal region of Internal Transcribed Spacer 1 from the 27SA2 pre-rRNA. Whereas the pathway leading to 5.8SS rRNA is well established, that producing the 5'-end of 5.8SL (called B1L) is poorly understood. Northern analysis of two different mutants of S. cerevisiae that overproduce 5.8SL rRNA revealed the presence of a fragment corresponding to the 3'-terminal region of Internal Transcribed Spacer 1 (ITS1) directly upstream from site B1L. Immunoprecipitation experiments showed this fragment to be associated with the trans-acting factor Rrp5p required for processing at the early sites A0-A3. Together these data clearly support that the 5'-end of 5.8SL rRNA is an endonucleolytic event. In vivo mutational analysis demonstrated the lack of any cis-acting sequence elements directing this cleavage within ITS1.
Similar articles
- The RNA catabolic enzymes Rex4p, Rnt1p, and Dbr1p show genetic interaction with trans-acting factors involved in processing of ITS1 in Saccharomyces cerevisiae pre-rRNA.
Faber AW, Vos JC, Vos HR, Ghazal G, Elela SA, Raué HA. Faber AW, et al. RNA. 2004 Dec;10(12):1946-56. doi: 10.1261/rna.7155904. Epub 2004 Nov 3. RNA. 2004. PMID: 15525710 Free PMC article. - The role of the 3' external transcribed spacer in yeast pre-rRNA processing.
Allmang C, Tollervey D. Allmang C, et al. J Mol Biol. 1998 Apr 24;278(1):67-78. doi: 10.1006/jmbi.1998.1693. J Mol Biol. 1998. PMID: 9571034 - Deletions in the S1 domain of Rrp5p cause processing at a novel site in ITS1 of yeast pre-rRNA that depends on Rex4p.
Eppens NA, Faber AW, Rondaij M, Jahangir RS, van Hemert S, Vos JC, Venema J, Raué HA. Eppens NA, et al. Nucleic Acids Res. 2002 Oct 1;30(19):4222-31. doi: 10.1093/nar/gkf538. Nucleic Acids Res. 2002. PMID: 12364601 Free PMC article. - DNA protein interactions at the rRNA of Saccharomyces cerevisiae.
Cioci F, Di Felice F, Chiani F, Camilloni G. Cioci F, et al. Ital J Biochem. 2007 Jun;56(2):81-90. Ital J Biochem. 2007. PMID: 17722648 Review.
Cited by
- An atypical form of 60S ribosomal subunit in Diamond-Blackfan anemia linked to RPL17 variants.
Fellmann F, Saunders C, O'Donohue MF, Reid DW, McFadden KA, Montel-Lehry N, Yu C, Fang M, Zhang J, Royer-Bertrand B, Farinelli P, Karboul N, Willer JR, Fievet L, Bhuiyan ZA, Kleinhenz AL, Jadeau J, Fulbright J, Rivolta C, Renella R, Katsanis N, Beckmann JS, Nicchitta CV, Da Costa L, Davis EE, Gleizes PE. Fellmann F, et al. JCI Insight. 2024 Aug 1;9(17):e172475. doi: 10.1172/jci.insight.172475. JCI Insight. 2024. PMID: 39088281 Free PMC article. - Rrp17p is a eukaryotic exonuclease required for 5' end processing of Pre-60S ribosomal RNA.
Oeffinger M, Zenklusen D, Ferguson A, Wei KE, El Hage A, Tollervey D, Chait BT, Singer RH, Rout MP. Oeffinger M, et al. Mol Cell. 2009 Dec 11;36(5):768-81. doi: 10.1016/j.molcel.2009.11.011. Mol Cell. 2009. PMID: 20005841 Free PMC article. - High resolution landscape of ribosomal RNA processing and surveillance.
An W, Yan Y, Ye K. An W, et al. Nucleic Acids Res. 2024 Sep 23;52(17):10630-10644. doi: 10.1093/nar/gkae606. Nucleic Acids Res. 2024. PMID: 38994562 Free PMC article. - Nol9 is a novel polynucleotide 5'-kinase involved in ribosomal RNA processing.
Heindl K, Martinez J. Heindl K, et al. EMBO J. 2010 Dec 15;29(24):4161-71. doi: 10.1038/emboj.2010.275. Epub 2010 Nov 9. EMBO J. 2010. PMID: 21063389 Free PMC article. - A cluster of ribosome synthesis factors regulate pre-rRNA folding and 5.8S rRNA maturation by the Rat1 exonuclease.
Granneman S, Petfalski E, Tollervey D. Granneman S, et al. EMBO J. 2011 Aug 2;30(19):4006-19. doi: 10.1038/emboj.2011.256. EMBO J. 2011. PMID: 21811236 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases