Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network - PubMed (original) (raw)
. 2006 Sep 15;22(18):2313-4.
doi: 10.1093/bioinformatics/btl387. Epub 2006 Jul 14.
Affiliations
- PMID: 16844708
- DOI: 10.1093/bioinformatics/btl387
Serial NetEvolve: a flexible utility for generating serially-sampled sequences along a tree or recombinant network
Patricia Buendia et al. Bioinformatics. 2006.
Abstract
Serial NetEvolve is a flexible simulation program that generates DNA sequences evolved along a tree or recombinant network. It offers a user-friendly Windows graphical interface and a Windows or Linux simulator with a diverse selection of parameters to control the evolutionary model. Serial NetEvolve is a modification of the Treevolve program with the following additional features: simulation of serially-sampled data, the choice of either a clock-like or a variable rate model of sequence evolution, sampling from the internal nodes and the output of the randomly generated tree or network in our newly proposed NeTwick format.
Availability: From website http://biorg.cis.fiu.edu/SNE Contacts: giri@cis.fiu.edu
Supplementary information: Manual and examples available from http://biorg.cis.fiu.edu/SNE.
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