An experimental metagenome data management and analysis system - PubMed (original) (raw)

. 2006 Jul 15;22(14):e359-67.

doi: 10.1093/bioinformatics/btl217.

Natalia Ivanova, Krishna Palaniappan, Ernest Szeto, Frank Korzeniewski, Athanasios Lykidis, Iain Anderson, Konstantinos Mavromatis, Victor Kunin, Hector Garcia Martin, Inna Dubchak, Phil Hugenholtz, Nikos C Kyrpides

Affiliations

• PMID: 16873494
• DOI: 10.1093/bioinformatics/btl217

An experimental metagenome data management and analysis system

Victor M Markowitz et al. Bioinformatics. 2006.

Erratum in

• Bioinformatics. 2006 Oct 15;22(20):2580. Mavrommatis, Konstantinos [corrected to Mavromatis, Konstantinos]

Abstract

The application of shotgun sequencing to environmental samples has revealed a new universe of microbial community genomes (metagenomes) involving previously uncultured organisms. Metagenome analysis, which is expected to provide a comprehensive picture of the gene functions and metabolic capacity for microbial communities, needs to be conducted in the context of a comprehensive data management and analysis system. We present in this paper IMG/M, an experimental metagenome data management and analysis system that is based on the Integrated Microbial Genomes (IMG) system. IMG/M provides tools and viewers for analyzing both metagenomes and isolate genomes individually or in a comparative context. IMG/M is available at http://img.jgi.doe.gov/m.

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