The use of inferred haplotypes in downstream analyses - PubMed (original) (raw)

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The use of inferred haplotypes in downstream analyses

D Y Lin et al. Am J Hum Genet. 2007 Mar.

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Comment in

• Re: the use of inferred haplotypes in downstream analysis.
  Kraft P, Stram DO. Kraft P, et al. Am J Hum Genet. 2007 Oct;81(4):863-5; author reply 865-6. doi: 10.1086/521371. Am J Hum Genet. 2007. PMID: 17847013 Free PMC article. No abstract available.

Comment on

• A comparison of phasing algorithms for trios and unrelated individuals.
  Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, Donnelly P; International HapMap Consortium. Marchini J, et al. Am J Hum Genet. 2006 Mar;78(3):437-50. doi: 10.1086/500808. Epub 2006 Jan 26. Am J Hum Genet. 2006. PMID: 16465620 Free PMC article.

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References

Web Resource

1. 1. HAPSTAT, http://www.bios.unc.edu/~lin/software/

References

1. 1. Marchini J, Cutler D, Patterson N, Stephens M, Eskin E, Halperin E, Lin S, Qin ZS, Munro HM, Abecasis GR, et al (2006) A comparison of phasing algorithms for trios and unrelated individuals. Am J Hum Genet 78:437–450 - PMC - PubMed
2. 1. Dempster AP, Rubin DB (1983) Introduction. In: Madow WG, Olkin I, Rubin DB (eds) Incomplete data in sample surveys, volume 2: theory and bibliography. Academic Press, New York, pp 3–10
3. 1. Epstein MP, Satten GA (2003) Inference on haplotype effects in case-control studies using unphased genotype data. Am J Hum Genet 73:1316–1329 - PMC - PubMed
4. 1. Fallin D, Schork NJ (2000) Accuracy of haplotype frequency estimation for bialleli loci, via the expectation-maximization algorithm for unphased diploid genotype data. Am J Hum Genet 67:947–959 - PMC - PubMed
5. 1. Morris AP, Whittaker JC, Balding DJ (2004) Little loss of information due to unknown phase for fine-scale linkage-disequilibrium mapping with single-nucleotide–polymorphism genotype data. Am J Hum Genet 74:945–953 - PMC - PubMed

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