Cryptic speciation in a model invertebrate chordate - PubMed (original) (raw)

Fig. 2.

Genetic divergence. (A) A single maximum parsimony tree (1,148 steps of length, confidence interval = 0.96) inferred from 2,578-bp concatenated nuclear (Hox5, Gsx, Hox13, and ITS-2) and mitochondrial (COX1) sequences is shown (192 parsimony informative sites, 7.44%). Maximum likelihood/maximum parsimony/neighbor joining bootstrap support (1,000 iterations) and Bayesian posterior probability values are shown, respectively, on the left and right of each node. Numbers after locality abbreviations indicate distinct haplotypes. (B) Microsatellite genotype-based factorial correspondence analysis in three-dimensional representation. Color codes: black, FuI; light gray, PlyMBA; dark gray, Fis; white, PlyS. (C) Median joining haplotype network based on 515-bp COI alignment. Haplotypes are shaded according to minimum–maximum latitudes. I, PlyMBA; II, FuI, FuE, CdS, VC, Ve, Ta, LT, Al, and Br-1; III, HMB; IV, JyB-2; V, OnM; VI, JyB-1; VII, Fis-2; VIII, PlyS-2; IX, BH; X, PlyS-1 and Br-2; XI, Fis-1; XII, Ed.