The effects of molecular noise and size control on variability in the budding yeast cell cycle - PubMed (original) (raw)
. 2007 Aug 23;448(7156):947-51.
doi: 10.1038/nature06072.
Affiliations
- PMID: 17713537
- DOI: 10.1038/nature06072
The effects of molecular noise and size control on variability in the budding yeast cell cycle
Stefano Di Talia et al. Nature. 2007.
Erratum in
- Nature. 2007 Dec 20;450(7173):1272
Abstract
Molecular noise in gene expression can generate substantial variability in protein concentration. However, its effect on the precision of a natural eukaryotic circuit such as the control of cell cycle remains unclear. We use single-cell imaging of fluorescently labelled budding yeast to measure times from division to budding (G1) and from budding to the next division. The variability in G1 decreases with the square root of the ploidy through a 1N/2N/4N ploidy series, consistent with simple stochastic models for molecular noise. Also, increasing the gene dosage of G1 cyclins decreases the variability in G1. A new single-cell reporter for cell protein content allows us to determine the contribution to temporal G1 variability of deterministic size control (that is, smaller cells extending G1). Cell size control contributes significantly to G1 variability in daughter cells but not in mother cells. However, even in daughters, size-independent noise is the largest quantitative contributor to G1 variability. Exit of the transcriptional repressor Whi5 from the nucleus partitions G1 into two temporally uncorrelated and functionally distinct steps. The first step, which depends on the G1 cyclin gene CLN3, corresponds to noisy size control that extends G1 in small daughters, but is of negligible duration in mothers. The second step, whose variability decreases with increasing CLN2 gene dosage, is similar in mothers and daughters. This analysis decomposes the regulatory dynamics of the Start transition into two independent modules, a size sensing module and a timing module, each of which is predominantly controlled by a different G1 cyclin.
Similar articles
- Cln3 activates G1-specific transcription via phosphorylation of the SBF bound repressor Whi5.
de Bruin RA, McDonald WH, Kalashnikova TI, Yates J 3rd, Wittenberg C. de Bruin RA, et al. Cell. 2004 Jun 25;117(7):887-98. doi: 10.1016/j.cell.2004.05.025. Cell. 2004. PMID: 15210110 - Cyclin Cln3 is retained at the ER and released by the J chaperone Ydj1 in late G1 to trigger cell cycle entry.
Vergés E, Colomina N, Garí E, Gallego C, Aldea M. Vergés E, et al. Mol Cell. 2007 Jun 8;26(5):649-62. doi: 10.1016/j.molcel.2007.04.023. Mol Cell. 2007. PMID: 17560371 - CDK activity antagonizes Whi5, an inhibitor of G1/S transcription in yeast.
Costanzo M, Nishikawa JL, Tang X, Millman JS, Schub O, Breitkreuz K, Dewar D, Rupes I, Andrews B, Tyers M. Costanzo M, et al. Cell. 2004 Jun 25;117(7):899-913. doi: 10.1016/j.cell.2004.05.024. Cell. 2004. PMID: 15210111 - Glucose modulation of cell size in yeast.
Vanoni M, Rossi RL, Querin L, Zinzalla V, Alberghina L. Vanoni M, et al. Biochem Soc Trans. 2005 Feb;33(Pt 1):294-6. doi: 10.1042/BST0330294. Biochem Soc Trans. 2005. PMID: 15667330 Review. - Pho85, a multifunctional cyclin-dependent protein kinase in budding yeast.
Huang D, Friesen H, Andrews B. Huang D, et al. Mol Microbiol. 2007 Oct;66(2):303-14. doi: 10.1111/j.1365-2958.2007.05914.x. Epub 2007 Sep 10. Mol Microbiol. 2007. PMID: 17850263 Review.
Cited by
- Identification of the molecular mechanisms for cell-fate selection in budding yeast through mathematical modeling.
Li Y, Yi M, Zou X. Li Y, et al. Biophys J. 2013 May 21;104(10):2282-94. doi: 10.1016/j.bpj.2013.03.057. Biophys J. 2013. PMID: 23708368 Free PMC article. - Dilution and titration of cell-cycle regulators may control cell size in budding yeast.
Heldt FS, Lunstone R, Tyson JJ, Novák B. Heldt FS, et al. PLoS Comput Biol. 2018 Oct 24;14(10):e1006548. doi: 10.1371/journal.pcbi.1006548. eCollection 2018 Oct. PLoS Comput Biol. 2018. PMID: 30356259 Free PMC article. - Measuring the growth rate of cells, one at a time.
Charvin G. Charvin G. Nat Methods. 2010 May;7(5):363. doi: 10.1038/nmeth0510-363. Nat Methods. 2010. PMID: 20431549 No abstract available. - Whi5 is diluted and protein synthesis does not dramatically increase in pre-Start G1.
Schmoller KM, Lanz MC, Kim J, Koivomagi M, Qu Y, Tang C, Kukhtevich IV, Schneider R, Rudolf F, Moreno DF, Aldea M, Lucena R, Skotheim JM. Schmoller KM, et al. Mol Biol Cell. 2022 May 1;33(5):lt1. doi: 10.1091/mbc.E21-01-0029. Mol Biol Cell. 2022. PMID: 35482510 Free PMC article. No abstract available. - Genetic and nongenetic determinants of cell growth variation assessed by high-throughput microscopy.
Ziv N, Siegal ML, Gresham D. Ziv N, et al. Mol Biol Evol. 2013 Dec;30(12):2568-78. doi: 10.1093/molbev/mst138. Epub 2013 Aug 11. Mol Biol Evol. 2013. PMID: 23938868 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases
Research Materials