RNA-splicing endonuclease structure and function - PubMed (original) (raw)
Review
RNA-splicing endonuclease structure and function
K Calvin et al. Cell Mol Life Sci. 2008 Apr.
Abstract
The RNA-splicing endonuclease is an evolutionarily conserved enzyme responsible for the excision of introns from nuclear transfer RNA (tRNA) and all archaeal RNAs. Since its first identification from yeast in the late 1970s, significant progress has been made toward understanding the biochemical mechanisms of this enzyme. Four families of the splicing endonucleases possessing the same active sites and overall architecture but with different subunit compositions have been identified. Two related consensus structures of the precursor RNA splice sites and the critical elements required for intron excision have been established. More recently, a glimpse was obtained of the structural mechanism by which the endonuclease recognizes the consensus RNA structures and cleaves at the splice sites. This review summarizes these findings and discusses their implications in the evolution of intron removal processes.
Similar articles
- New insights into RNA processing by the eukaryotic tRNA splicing endonuclease.
Hayne CK, Sekulovski S, Hurtig JE, Stanley RE, Trowitzsch S, van Hoof A. Hayne CK, et al. J Biol Chem. 2023 Sep;299(9):105138. doi: 10.1016/j.jbc.2023.105138. Epub 2023 Aug 5. J Biol Chem. 2023. PMID: 37544645 Free PMC article. Review. - A novel three-unit tRNA splicing endonuclease found in ultrasmall Archaea possesses broad substrate specificity.
Fujishima K, Sugahara J, Miller CS, Baker BJ, Di Giulio M, Takesue K, Sato A, Tomita M, Banfield JF, Kanai A. Fujishima K, et al. Nucleic Acids Res. 2011 Dec;39(22):9695-704. doi: 10.1093/nar/gkr692. Epub 2011 Aug 31. Nucleic Acids Res. 2011. PMID: 21880595 Free PMC article. - Cleavage of pre-tRNAs by the splicing endonuclease requires a composite active site.
Trotta CR, Paushkin SV, Patel M, Li H, Peltz SW. Trotta CR, et al. Nature. 2006 May 18;441(7091):375-7. doi: 10.1038/nature04741. Nature. 2006. PMID: 16710424 - The heteromeric Nanoarchaeum equitans splicing endonuclease cleaves noncanonical bulge-helix-bulge motifs of joined tRNA halves.
Randau L, Calvin K, Hall M, Yuan J, Podar M, Li H, Söll D. Randau L, et al. Proc Natl Acad Sci U S A. 2005 Dec 13;102(50):17934-9. doi: 10.1073/pnas.0509197102. Epub 2005 Dec 5. Proc Natl Acad Sci U S A. 2005. PMID: 16330750 Free PMC article. - Recent insights into the structure, function, and regulation of the eukaryotic transfer RNA splicing endonuclease complex.
Hayne CK, Lewis TA, Stanley RE. Hayne CK, et al. Wiley Interdiscip Rev RNA. 2022 Sep;13(5):e1717. doi: 10.1002/wrna.1717. Epub 2022 Feb 14. Wiley Interdiscip Rev RNA. 2022. PMID: 35156311 Free PMC article. Review.
Cited by
- X-ray structure of the fourth type of archaeal tRNA splicing endonuclease: insights into the evolution of a novel three-unit composition and a unique loop involved in broad substrate specificity.
Hirata A, Fujishima K, Yamagami R, Kawamura T, Banfield JF, Kanai A, Hori H. Hirata A, et al. Nucleic Acids Res. 2012 Nov 1;40(20):10554-66. doi: 10.1093/nar/gks826. Epub 2012 Aug 31. Nucleic Acids Res. 2012. PMID: 22941657 Free PMC article. - The RNA- and DNA-targeting CRISPR-Cas immune systems of Pyrococcus furiosus.
Terns RM, Terns MP. Terns RM, et al. Biochem Soc Trans. 2013 Dec;41(6):1416-21. doi: 10.1042/BST20130056. Biochem Soc Trans. 2013. PMID: 24256230 Free PMC article. Review. - Evolution of introns in the archaeal world.
Tocchini-Valentini GD, Fruscoloni P, Tocchini-Valentini GP. Tocchini-Valentini GD, et al. Proc Natl Acad Sci U S A. 2011 Mar 22;108(12):4782-7. doi: 10.1073/pnas.1100862108. Epub 2011 Mar 7. Proc Natl Acad Sci U S A. 2011. PMID: 21383132 Free PMC article. - Active site plasticity enables metal-dependent tuning of Cas5d nuclease activity in CRISPR-Cas type I-C system.
Punetha A, Sivathanu R, Anand B. Punetha A, et al. Nucleic Acids Res. 2014 Apr;42(6):3846-56. doi: 10.1093/nar/gkt1335. Epub 2013 Dec 25. Nucleic Acids Res. 2014. PMID: 24371266 Free PMC article. - New insights into RNA processing by the eukaryotic tRNA splicing endonuclease.
Hayne CK, Sekulovski S, Hurtig JE, Stanley RE, Trowitzsch S, van Hoof A. Hayne CK, et al. J Biol Chem. 2023 Sep;299(9):105138. doi: 10.1016/j.jbc.2023.105138. Epub 2023 Aug 5. J Biol Chem. 2023. PMID: 37544645 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases