Substitution of the gene for chloroplast RPS16 was assisted by generation of a dual targeting signal - PubMed (original) (raw)
Comparative Study
. 2008 Aug;25(8):1566-75.
doi: 10.1093/molbev/msn102. Epub 2008 May 2.
Affiliations
- PMID: 18453549
- DOI: 10.1093/molbev/msn102
Comparative Study
Substitution of the gene for chloroplast RPS16 was assisted by generation of a dual targeting signal
Minoru Ueda et al. Mol Biol Evol. 2008 Aug.
Abstract
Organelle (mitochondria and chloroplasts in plants) genomes lost a large number of genes after endosymbiosis occurred. Even after this major gene loss, organelle genomes still lose their own genes, even those that are essential, via gene transfer to the nucleus and gene substitution of either different organelle origin or de novo genes. Gene transfer and substitution events are important processes in the evolution of the eukaryotic cell. Gene loss is an ongoing process in the mitochondria and chloroplasts of higher plants. The gene for ribosomal protein S16 (rps16) is encoded in the chloroplast genome of most higher plants but not in Medicago truncatula and Populus alba. Here, we show that these 2 species have compensated for loss of the rps16 from the chloroplast genome by having a mitochondrial rps16 that can target the chloroplasts as well as mitochondria. Furthermore, in Arabidopsis thaliana, Lycopersicon esculentum, and Oryza sativa, whose chloroplast genomes encode the rps16, we show that the product of the mitochondrial rps16 has dual targeting ability. These results suggest that the dual targeting of RPS16 to the mitochondria and chloroplasts emerged before the divergence of monocots and dicots (140-150 MYA). The gene substitution of the chloroplast rps16 by the nuclear-encoded rps16 in higher plants is the first report about ongoing gene substitution by dual targeting and provides evidence for an intermediate stage in the formation of this heterogeneous organelle.
Similar articles
- Different status of the gene for ribosomal protein S16 in the chloroplast genome during evolution of the genus Arabidopsis and closely related species.
Roy S, Ueda M, Kadowaki K, Tsutsumi N. Roy S, et al. Genes Genet Syst. 2010;85(5):319-26. doi: 10.1266/ggs.85.319. Genes Genet Syst. 2010. PMID: 21317544 - Relative rates of synonymous substitutions in the mitochondrial, chloroplast and nuclear genomes of seed plants.
Drouin G, Daoud H, Xia J. Drouin G, et al. Mol Phylogenet Evol. 2008 Dec;49(3):827-31. doi: 10.1016/j.ympev.2008.09.009. Epub 2008 Sep 21. Mol Phylogenet Evol. 2008. PMID: 18838124 - Presence of a latent mitochondrial targeting signal in gene on mitochondrial genome.
Ueda M, Fujimoto M, Arimura S, Tsutsumi N, Kadowaki K. Ueda M, et al. Mol Biol Evol. 2008 Sep;25(9):1791-3. doi: 10.1093/molbev/msn139. Epub 2008 Jun 23. Mol Biol Evol. 2008. PMID: 18573842 - Genomics-based dissection of the cross-talk of chloroplasts with the nucleus and mitochondria in Arabidopsis.
Leister D. Leister D. Gene. 2005 Jul 18;354:110-6. doi: 10.1016/j.gene.2005.03.039. Gene. 2005. PMID: 15908143 Review. - [Genomics and evolution of cellular organelles].
Odintsova MS, Iurina NP. Odintsova MS, et al. Genetika. 2005 Sep;41(9):1170-82. Genetika. 2005. PMID: 16240629 Review. Russian.
Cited by
- The chloroplast genome of black pepper (Piper nigrum L.) and its comparative analysis with related Piper species.
Gaikwad AB, Kaila T, Maurya A, Kumari R, Rangan P, Wankhede DP, Bhat KV. Gaikwad AB, et al. Front Plant Sci. 2023 Jan 12;13:1095781. doi: 10.3389/fpls.2022.1095781. eCollection 2022. Front Plant Sci. 2023. PMID: 36714762 Free PMC article. - The evolutionary fate of rpl32 and rps16 losses in the Euphorbia schimperi (Euphorbiaceae) plastome.
Alqahtani AA, Jansen RK. Alqahtani AA, et al. Sci Rep. 2021 Apr 2;11(1):7466. doi: 10.1038/s41598-021-86820-z. Sci Rep. 2021. PMID: 33811236 Free PMC article. - Plastome structure, phylogenomics and evolution of plastid genes in Swertia (Gentianaceae) in the Qing-Tibetan Plateau.
Cao Q, Gao Q, Ma X, Zhang F, Xing R, Chi X, Chen S. Cao Q, et al. BMC Plant Biol. 2022 Apr 12;22(1):195. doi: 10.1186/s12870-022-03577-x. BMC Plant Biol. 2022. PMID: 35413790 Free PMC article. - Identification of evolutionary relationships and DNA markers in the medicinally important genus Fritillaria based on chloroplast genomics.
Zhang T, Huang S, Song S, Zou M, Yang T, Wang W, Zhou J, Liao H. Zhang T, et al. PeerJ. 2021 Dec 16;9:e12612. doi: 10.7717/peerj.12612. eCollection 2021. PeerJ. 2021. PMID: 35003925 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases
Miscellaneous