An introduction to bioinformatics for glycomics research - PubMed (original) (raw)
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An introduction to bioinformatics for glycomics research
Kiyoko F Aoki-Kinoshita. PLoS Comput Biol. 2008.
No abstract available
Conflict of interest statement
The author has declared that no competing interests exist.
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References
- Apweiler R, Hermjakob H, Sharon N. On the frequency of protein glycosylation, as deduced from analysis of the SWISS-PROT database. Biochimica et Biophysica Acta. 1999;1473:4–8. - PubMed
- Raman R, Venkataraman M, Ramakrishnan S, Lang W, Raguram S, et al. Advancing glycomics: Implementation strategies at the Consortium for Functional Glycomics. Glycobiology. 2006;16:82R–90R. - PubMed
- Hashimoto K, Goto S, Kawano S, Aoki-Kinoshita KF, Ueda N, et al. M KEGG: A glycome informatics resource. Glycobiology. 2006;16:63R–70R. - PubMed
- Lütteke T, Bohne-Lang A, Loss A, Goetz T, Frank M, et al. GLYCOSCIENCES.de: An Internet portal to support glycomics and glycobiology research. Glycobiology. 2006;16:71R–81R. - PubMed
- Freeze HH. Genetic defects in the human glycome. Nat Rev Genet. 2006;7:537–551. - PubMed
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