Admixture as the basis for genetic mapping - PubMed (original) (raw)
Review
. 2008 Dec;23(12):686-94.
doi: 10.1016/j.tree.2008.07.008. Epub 2008 Oct 8.
Affiliations
- PMID: 18845358
- DOI: 10.1016/j.tree.2008.07.008
Review
Admixture as the basis for genetic mapping
C Alex Buerkle et al. Trends Ecol Evol. 2008 Dec.
Abstract
Genetic mapping in natural populations is increasing rapidly in feasibility and accessibility. As with many areas in genetics, advances in molecular techniques and statistics are drastically altering how we can investigate inheritance in wild organisms. For ecology and evolution, this is particularly significant and promising, because many of the organisms of interest are not amenable to conventional genetic approaches. Admixture mapping falls within a family of statistical approaches that use natural recombination and linkage disequilibrium between genetic markers and phenotypes as the basis for mapping. Our aim in this review is to provide a snapshot of previous and ongoing research, existing methods and challenges, the nature of questions that can be investigated and prospects for the future of admixture mapping.
Similar articles
- Genome-enabled development of DNA markers for ecology, evolution and conservation.
Thomson RC, Wang IJ, Johnson JR. Thomson RC, et al. Mol Ecol. 2010 Jun;19(11):2184-95. doi: 10.1111/j.1365-294X.2010.04650.x. Epub 2010 May 10. Mol Ecol. 2010. PMID: 20465588 Review. - Bayesian analyses of admixture in wild and domestic cats (Felis silvestris) using linked microsatellite loci.
Lecis R, Pierpaoli M, Birò ZS, Szemethy L, Ragni B, Vercillo F, Randi E. Lecis R, et al. Mol Ecol. 2006 Jan;15(1):119-31. doi: 10.1111/j.1365-294X.2005.02812.x. Mol Ecol. 2006. PMID: 16367835 - Admixture and patterns of linkage disequilibrium in a free-living vertebrate population.
Slate J, Pemberton JM. Slate J, et al. J Evol Biol. 2007 Jul;20(4):1415-27. doi: 10.1111/j.1420-9101.2007.01339.x. J Evol Biol. 2007. PMID: 17584236 - A nearest-neighboring-end algorithm for genetic mapping.
Crane CF, Crane YM. Crane CF, et al. Bioinformatics. 2005 Apr 15;21(8):1579-91. doi: 10.1093/bioinformatics/bti164. Epub 2004 Nov 25. Bioinformatics. 2005. PMID: 15564296 - Linkage and association: basic concepts.
Borecki IB, Province MA. Borecki IB, et al. Adv Genet. 2008;60:51-74. doi: 10.1016/S0065-2660(07)00403-8. Adv Genet. 2008. PMID: 18358316 Review.
Cited by
- The Fate of a Polygenic Phenotype Within the Genomic Landscapes of Introgression in the European Seabass Hybrid Zone.
Leitwein M, Durif G, Delpuech E, Gagnaire PA, Ernande B, Vandeputte M, Vergnet A, Duranton M, Clota F, Allal F. Leitwein M, et al. Mol Biol Evol. 2024 Sep 4;41(9):msae194. doi: 10.1093/molbev/msae194. Mol Biol Evol. 2024. PMID: 39271153 Free PMC article. - An annotated chromosome-scale reference genome for Eastern black-eared wheatear (Oenanthe melanoleuca).
Peona V, Palacios-Gimenez OM, Lutgen D, Olsen RA, Alaei Kakhki N, Andriopoulos P, Bontzorlos V, Schweizer M, Suh A, Burri R. Peona V, et al. G3 (Bethesda). 2023 Jun 1;13(6):jkad088. doi: 10.1093/g3journal/jkad088. G3 (Bethesda). 2023. PMID: 37097035 Free PMC article. - Genomic clines across the species boundary between a hybrid pine and its progenitor in the eastern Tibetan Plateau.
Guo JF, Zhao W, Andersson B, Mao JF, Wang XR. Guo JF, et al. Plant Commun. 2023 Jul 10;4(4):100574. doi: 10.1016/j.xplc.2023.100574. Epub 2023 Mar 11. Plant Commun. 2023. PMID: 36906801 Free PMC article. - ClineHelpR: an R package for genomic cline outlier detection and visualization.
Martin BT, Chafin TK, Douglas MR, Douglas ME. Martin BT, et al. BMC Bioinformatics. 2021 Oct 16;22(1):501. doi: 10.1186/s12859-021-04423-x. BMC Bioinformatics. 2021. PMID: 34656096 Free PMC article. - Admixture mapping reveals loci for carcass mass in red deer x sika hybrids in Kintyre, Scotland.
McFarlane SE, Pemberton JM. McFarlane SE, et al. G3 (Bethesda). 2021 Sep 27;11(10):jkab274. doi: 10.1093/g3journal/jkab274. G3 (Bethesda). 2021. PMID: 34568926 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Research Materials