Kinetics for formate dehydrogenase of Escherichia coli formate-hydrogenlyase - PubMed (original) (raw)
. 1991 Jul 25;266(21):13731-6.
Affiliations
- PMID: 1906883
Free article
Kinetics for formate dehydrogenase of Escherichia coli formate-hydrogenlyase
M J Axley et al. J Biol Chem. 1991.
Free article
Abstract
Kinetic parameters of the selenium-containing, formate dehydrogenase component of the Escherichia coli formate-hydrogenlyase complex have been determined with purified enzyme. A ping-pong Bi Bi kinetic mechanism was observed. The Km for formate is 26 mM, and the Km for the electron-accepting dye, benzyl viologen, is in the range 1-5 mM. The maximal turnover rate for the formate-dependent catalysis of benzyl viologen reduction was calculated to be 1.7 x 10(5) min-1. Isotope exchange analysis showed that the enzyme catalyzes carbon exchange between carbon dioxide and formate in the absence of other electron acceptors, confirming the ping-pong reaction mechanism. Dissociation constants for formate (12.2 mM) and CO2 (8.3 mM) were derived from analysis of the isotope exchange data. The enzyme catalyzes oxidation of the alternative substrate deuterioformate with little change in the Vmax, but the Km for deuterioformate is approximately three times that of protioformate. This implies formate oxidation is not rate-limiting in the overall coupled reaction of formate oxidation and benzyl viologen reduction. The deuterium isotope effect on Vmax/Km was observed to be approximately 4.2-4.5. Sodium nitrate was found to inhibit enzyme activity in a competitive manner with respect to formate, with a Ki of 7.1 mM. Sodium azide is a noncompetitive inhibitor with a Ki of about 80 microM.
Similar articles
- Efficient Hydrogen-Dependent Carbon Dioxide Reduction by Escherichia coli.
Roger M, Brown F, Gabrielli W, Sargent F. Roger M, et al. Curr Biol. 2018 Jan 8;28(1):140-145.e2. doi: 10.1016/j.cub.2017.11.050. Epub 2017 Dec 28. Curr Biol. 2018. PMID: 29290558 Free PMC article. - Selenium-containing formate dehydrogenase H from Escherichia coli: a molybdopterin enzyme that catalyzes formate oxidation without oxygen transfer.
Khangulov SV, Gladyshev VN, Dismukes GC, Stadtman TC. Khangulov SV, et al. Biochemistry. 1998 Mar 10;37(10):3518-28. doi: 10.1021/bi972177k. Biochemistry. 1998. PMID: 9521673 - Exploring the directionality of Escherichia coli formate hydrogenlyase: a membrane-bound enzyme capable of fixing carbon dioxide to organic acid.
Pinske C, Sargent F. Pinske C, et al. Microbiologyopen. 2016 Oct;5(5):721-737. doi: 10.1002/mbo3.365. Epub 2016 May 2. Microbiologyopen. 2016. PMID: 27139710 Free PMC article. - Anaerobic Formate and Hydrogen Metabolism.
Pinske C, Sawers RG. Pinske C, et al. EcoSal Plus. 2016 Oct;7(1). doi: 10.1128/ecosalplus.ESP-0011-2016. EcoSal Plus. 2016. PMID: 27735784 Review. - FocA and its central role in fine-tuning pH homeostasis of enterobacterial formate metabolism.
Kammel M, Pinske C, Sawers RG. Kammel M, et al. Microbiology (Reading). 2022 Oct;168(10). doi: 10.1099/mic.0.001253. Microbiology (Reading). 2022. PMID: 36197793 Review.
Cited by
- Metal-Containing Formate Dehydrogenases, a Personal View.
Leimkühler S. Leimkühler S. Molecules. 2023 Jul 11;28(14):5338. doi: 10.3390/molecules28145338. Molecules. 2023. PMID: 37513211 Free PMC article. Review. - Second and Outer Coordination Sphere Effects in Nitrogenase, Hydrogenase, Formate Dehydrogenase, and CO Dehydrogenase.
Stripp ST, Duffus BR, Fourmond V, Léger C, Leimkühler S, Hirota S, Hu Y, Jasniewski A, Ogata H, Ribbe MW. Stripp ST, et al. Chem Rev. 2022 Jul 27;122(14):11900-11973. doi: 10.1021/acs.chemrev.1c00914. Epub 2022 Jul 18. Chem Rev. 2022. PMID: 35849738 Free PMC article. Review. - Computation of condition-dependent proteome allocation reveals variability in the macro and micro nutrient requirements for growth.
Lloyd CJ, Monk J, Yang L, Ebrahim A, Palsson BO. Lloyd CJ, et al. PLoS Comput Biol. 2021 Jun 23;17(6):e1007817. doi: 10.1371/journal.pcbi.1007817. eCollection 2021 Jun. PLoS Comput Biol. 2021. PMID: 34161321 Free PMC article. - Understanding How the Rate of C-H Bond Cleavage Affects Formate Oxidation Catalysis by a Mo-Dependent Formate Dehydrogenase.
Robinson WE, Bassegoda A, Blaza JN, Reisner E, Hirst J. Robinson WE, et al. J Am Chem Soc. 2020 Jul 15;142(28):12226-12236. doi: 10.1021/jacs.0c03574. Epub 2020 Jul 6. J Am Chem Soc. 2020. PMID: 32551568 Free PMC article. - Molecular Hydrogen Metabolism: a Widespread Trait of Pathogenic Bacteria and Protists.
Benoit SL, Maier RJ, Sawers RG, Greening C. Benoit SL, et al. Microbiol Mol Biol Rev. 2020 Jan 29;84(1):e00092-19. doi: 10.1128/MMBR.00092-19. Print 2020 Feb 19. Microbiol Mol Biol Rev. 2020. PMID: 31996394 Free PMC article. Review.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Molecular Biology Databases
Miscellaneous