An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II - PubMed (original) (raw)
doi: 10.1038/nsmb.1539. Epub 2008 Dec 14.
Affiliations
- PMID: 19079263
- DOI: 10.1038/nsmb.1539
An atypical RNA polymerase involved in RNA silencing shares small subunits with RNA polymerase II
Linfeng Huang et al. Nat Struct Mol Biol. 2009 Jan.
Abstract
Genetic evidence indicates that plant-specific homologs of DNA-dependent RNA polymerase (Pol) II large subunits form Pol IV and Pol V complexes involved in small interfering RNA production and RNA-directed DNA methylation. Here we describe evidence that Pol V contains subunits shared with Pol II, but that RNA polymerase II subunit (RPB)-4 is missing from Pol V and that RPB5 is present as a Pol V-specific isomer, RPB5b. Pol V also has other proteins that are not present in Pol II, consistent with a role of this complex as an effector of silencing.
Similar articles
- NRPD4, a protein related to the RPB4 subunit of RNA polymerase II, is a component of RNA polymerases IV and V and is required for RNA-directed DNA methylation.
He XJ, Hsu YF, Pontes O, Zhu J, Lu J, Bressan RA, Pikaard C, Wang CS, Zhu JK. He XJ, et al. Genes Dev. 2009 Feb 1;23(3):318-30. doi: 10.1101/gad.1765209. Genes Dev. 2009. PMID: 19204117 Free PMC article. - Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.
Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L, Pikaard CS. Ream TS, et al. Mol Cell. 2009 Jan 30;33(2):192-203. doi: 10.1016/j.molcel.2008.12.015. Epub 2008 Dec 24. Mol Cell. 2009. PMID: 19110459 Free PMC article. - Metal A and metal B sites of nuclear RNA polymerases Pol IV and Pol V are required for siRNA-dependent DNA methylation and gene silencing.
Haag JR, Pontes O, Pikaard CS. Haag JR, et al. PLoS One. 2009;4(1):e4110. doi: 10.1371/journal.pone.0004110. Epub 2009 Jan 1. PLoS One. 2009. PMID: 19119310 Free PMC article. - RNA polymerase-DNA interaction: structures of intermediate, open, and elongation complexes.
Ebright RH. Ebright RH. Cold Spring Harb Symp Quant Biol. 1998;63:11-20. doi: 10.1101/sqb.1998.63.11. Cold Spring Harb Symp Quant Biol. 1998. PMID: 10384266 Review. No abstract available. - RNA-Directed DNA Methylation: The Evolution of a Complex Epigenetic Pathway in Flowering Plants.
Matzke MA, Kanno T, Matzke AJ. Matzke MA, et al. Annu Rev Plant Biol. 2015;66:243-67. doi: 10.1146/annurev-arplant-043014-114633. Epub 2014 Dec 10. Annu Rev Plant Biol. 2015. PMID: 25494460 Review.
Cited by
- Transcription elongation of the plant RNA polymerase IV is prone to backtracking.
Fang C, Huang K, Wu X, Zhang H, Gu Z, Wang J, Zhang Y. Fang C, et al. Sci Adv. 2024 Aug 23;10(34):eadq3087. doi: 10.1126/sciadv.adq3087. Epub 2024 Aug 23. Sci Adv. 2024. PMID: 39178250 Free PMC article. - RNA Polymerases IV and V Are Involved in Olive Fruit Development.
Serrano A, Moret M, Fernández-Parras I, Bombarely A, Luque F, Navarro F. Serrano A, et al. Genes (Basel). 2023 Dec 19;15(1):1. doi: 10.3390/genes15010001. Genes (Basel). 2023. PMID: 38275583 Free PMC article. - DNA-dependent RNA polymerases in plants.
Yang DL, Huang K, Deng D, Zeng Y, Wang Z, Zhang Y. Yang DL, et al. Plant Cell. 2023 Sep 27;35(10):3641-3661. doi: 10.1093/plcell/koad195. Plant Cell. 2023. PMID: 37453082 Free PMC article. - Structure and mechanism of the plant RNA polymerase V.
Xie G, Du X, Hu H, Li S, Cao X, Jacobsen SE, Du J. Xie G, et al. Science. 2023 Mar 24;379(6638):1209-1213. doi: 10.1126/science.adf8231. Epub 2023 Mar 9. Science. 2023. PMID: 36893216 Free PMC article. - ZMP recruits and excludes Pol IV-mediated DNA methylation in a site-specific manner.
Wang Y, Le BH, Wang J, You C, Zhao Y, Galli M, Xu Y, Gallavotti A, Eulgem T, Mo B, Chen X. Wang Y, et al. Sci Adv. 2022 Nov 25;8(47):eadc9454. doi: 10.1126/sciadv.adc9454. Epub 2022 Nov 25. Sci Adv. 2022. PMID: 36427317 Free PMC article.
References
- Genes Dev. 2005 Oct 1;19(19):2301-6 - PubMed
- Trends Biochem Sci. 1996 Nov;21(11):425-6 - PubMed
- Nat Genet. 2005 Jul;37(7):761-5 - PubMed
- Science. 2005 Jul 15;309(5733):467-9 - PubMed
- J Biol Chem. 1998 Mar 6;273(10):5631-7 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources