De novo transcriptome assembly with ABySS - PubMed (original) (raw)
- Bridger: a new framework for de novo transcriptome assembly using RNA-seq data.
Chang Z, Li G, Liu J, Zhang Y, Ashby C, Liu D, Cramer CL, Huang X. Chang Z, et al. Genome Biol. 2015 Feb 11;16(1):30. doi: 10.1186/s13059-015-0596-2. Genome Biol. 2015. PMID: 25723335 Free PMC article.
- A framework genetic map for Miscanthus sinensis from RNAseq-based markers shows recent tetraploidy.
Swaminathan K, Chae WB, Mitros T, Varala K, Xie L, Barling A, Glowacka K, Hall M, Jezowski S, Ming R, Hudson M, Juvik JA, Rokhsar DS, Moose SP. Swaminathan K, et al. BMC Genomics. 2012 Apr 24;13:142. doi: 10.1186/1471-2164-13-142. BMC Genomics. 2012. PMID: 22524439 Free PMC article.
- Asian Citrus Psyllid Expression Profiles Suggest Candidatus Liberibacter Asiaticus-Mediated Alteration of Adult Nutrition and Metabolism, and of Nymphal Development and Immunity.
Vyas M, Fisher TW, He R, Nelson W, Yin G, Cicero JM, Willer M, Kim R, Kramer R, May GA, Crow JA, Soderlund CA, Gang DR, Brown JK. Vyas M, et al. PLoS One. 2015 Jun 19;10(6):e0130328. doi: 10.1371/journal.pone.0130328. eCollection 2015. PLoS One. 2015. PMID: 26091106 Free PMC article.
- Pan-cancer analysis of advanced patient tumors reveals interactions between therapy and genomic landscapes.
Pleasance E, Titmuss E, Williamson L, Kwan H, Culibrk L, Zhao EY, Dixon K, Fan K, Bowlby R, Jones MR, Shen Y, Grewal JK, Ashkani J, Wee K, Grisdale CJ, Thibodeau ML, Bozoky Z, Pearson H, Majounie E, Vira T, Shenwai R, Mungall KL, Chuah E, Davies A, Warren M, Reisle C, Bonakdar M, Taylor GA, Csizmok V, Chan SK, Zong Z, Bilobram S, Muhammadzadeh A, D'Souza D, Corbett RD, MacMillan D, Carreira M, Choo C, Bleile D, Sadeghi S, Zhang W, Wong T, Cheng D, Brown SD, Holt RA, Moore RA, Mungall AJ, Zhao Y, Nelson J, Fok A, Ma Y, Lee MKC, Lavoie JM, Mendis S, Karasinska JM, Deol B, Fisic A, Schaeffer DF, Yip S, Schrader K, Regier DA, Weymann D, Chia S, Gelmon K, Tinker A, Sun S, Lim H, Renouf DJ, Laskin J, Jones SJM, Marra MA. Pleasance E, et al. Nat Cancer. 2020 Apr;1(4):452-468. doi: 10.1038/s43018-020-0050-6. Epub 2020 Apr 13. Nat Cancer. 2020. PMID: 35121966
- Estimation of alternative splicing isoform frequencies from RNA-Seq data.
Nicolae M, Mangul S, Măndoiu II, Zelikovsky A. Nicolae M, et al. Algorithms Mol Biol. 2011 Apr 19;6(1):9. doi: 10.1186/1748-7188-6-9. Algorithms Mol Biol. 2011. PMID: 21504602 Free PMC article.