Metagenomic analysis of viruses in reclaimed water - PubMed (original) (raw)
Metagenomic analysis of viruses in reclaimed water
Karyna Rosario et al. Environ Microbiol. 2009 Nov.
Abstract
Reclaimed water use is an important component of sustainable water resource management. However, there are concerns regarding pathogen transport through this alternative water supply. This study characterized the viral community found in reclaimed water and compared it with viruses in potable water. Reclaimed water contained 1000-fold more virus-like particles than potable water, having approximately 10(8) VLPs per millilitre. Metagenomic analyses revealed that most of the viruses in both reclaimed and potable water were novel. Bacteriophages dominated the DNA viral community in both reclaimed and potable water, but reclaimed water had a distinct phage community based on phage family distributions and host representation within each family. Eukaryotic viruses similar to plant pathogens and invertebrate picornaviruses dominated RNA metagenomic libraries. Established human pathogens were not detected in reclaimed water viral metagenomes, which contained a wealth of novel single-stranded DNA and RNA viruses related to plant, animal and insect viruses. Therefore, reclaimed water may play a role in the dissemination of highly stable viruses. Information regarding viruses present in reclaimed water but not in potable water can be used to identify new bioindicators of water quality. Future studies will need to investigate the infectivity and host range of these viruses to evaluate the impacts of reclaimed water use on human and ecosystem health.
Similar articles
- High diversity of the viral community from an Antarctic lake.
López-Bueno A, Tamames J, Velázquez D, Moya A, Quesada A, Alcamí A. López-Bueno A, et al. Science. 2009 Nov 6;326(5954):858-61. doi: 10.1126/science.1179287. Science. 2009. PMID: 19892985 - National Research Council report on potable reuse.
Crook J. Crook J. Schriftenr Ver Wasser Boden Lufthyg. 2000;105:221-6. Schriftenr Ver Wasser Boden Lufthyg. 2000. PMID: 10842818 - Advances in the study of marine viruses.
Proctor LM. Proctor LM. Microsc Res Tech. 1997 Apr 15;37(2):136-61. doi: 10.1002/(SICI)1097-0029(19970415)37:2<136::AID-JEMT3>3.0.CO;2-M. Microsc Res Tech. 1997. PMID: 9145395 Review. - Virioplankton 'pegylation': use of PEG (polyethylene glycol) to concentrate and purify viruses in pelagic ecosystems.
Colombet J, Robin A, Lavie L, Bettarel Y, Cauchie HM, Sime-Ngando T. Colombet J, et al. J Microbiol Methods. 2007 Dec;71(3):212-9. doi: 10.1016/j.mimet.2007.08.012. Epub 2007 Sep 4. J Microbiol Methods. 2007. PMID: 17897741 - Viral metagenomics.
Edwards RA, Rohwer F. Edwards RA, et al. Nat Rev Microbiol. 2005 Jun;3(6):504-10. doi: 10.1038/nrmicro1163. Nat Rev Microbiol. 2005. PMID: 15886693 Review.
Cited by
- Reference-independent comparative metagenomics using cross-assembly: crAss.
Dutilh BE, Schmieder R, Nulton J, Felts B, Salamon P, Edwards RA, Mokili JL. Dutilh BE, et al. Bioinformatics. 2012 Dec 15;28(24):3225-31. doi: 10.1093/bioinformatics/bts613. Epub 2012 Oct 16. Bioinformatics. 2012. PMID: 23074261 Free PMC article. - Detection of pathogens in water: from phylochips to qPCR to pyrosequencing.
Aw TG, Rose JB. Aw TG, et al. Curr Opin Biotechnol. 2012 Jun;23(3):422-30. doi: 10.1016/j.copbio.2011.11.016. Epub 2011 Dec 5. Curr Opin Biotechnol. 2012. PMID: 22153035 Free PMC article. Review. - A bioinformatic analysis of ribonucleotide reductase genes in phage genomes and metagenomes.
Dwivedi B, Xue B, Lundin D, Edwards RA, Breitbart M. Dwivedi B, et al. BMC Evol Biol. 2013 Feb 7;13:33. doi: 10.1186/1471-2148-13-33. BMC Evol Biol. 2013. PMID: 23391036 Free PMC article. - Can plant viruses cross the kingdom border and be pathogenic to humans?
Balique F, Lecoq H, Raoult D, Colson P. Balique F, et al. Viruses. 2015 Apr 20;7(4):2074-98. doi: 10.3390/v7042074. Viruses. 2015. PMID: 25903834 Free PMC article. Review. - Viral composition and context in metagenomes from biofilm and suspended growth municipal wastewater treatment plants.
Petrovich ML, Ben Maamar S, Hartmann EM, Murphy BT, Poretsky RS, Wells GF. Petrovich ML, et al. Microb Biotechnol. 2019 Nov;12(6):1324-1336. doi: 10.1111/1751-7915.13464. Epub 2019 Aug 14. Microb Biotechnol. 2019. PMID: 31410982 Free PMC article.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources