Targeted retrieval and analysis of five Neandertal mtDNA genomes - PubMed (original) (raw)
. 2009 Jul 17;325(5938):318-21.
doi: 10.1126/science.1174462.
Jeffrey M Good, Richard E Green, Johannes Krause, Tomislav Maricic, Udo Stenzel, Carles Lalueza-Fox, Pavao Rudan, Dejana Brajkovic, Zeljko Kucan, Ivan Gusic, Ralf Schmitz, Vladimir B Doronichev, Liubov V Golovanova, Marco de la Rasilla, Javier Fortea, Antonio Rosas, Svante Pääbo
Affiliations
- PMID: 19608918
- DOI: 10.1126/science.1174462
Targeted retrieval and analysis of five Neandertal mtDNA genomes
Adrian W Briggs et al. Science. 2009.
Abstract
Analysis of Neandertal DNA holds great potential for investigating the population history of this group of hominins, but progress has been limited due to the rarity of samples and damaged state of the DNA. We present a method of targeted ancient DNA sequence retrieval that greatly reduces sample destruction and sequencing demands and use this method to reconstruct the complete mitochondrial DNA (mtDNA) genomes of five Neandertals from across their geographic range. We find that mtDNA genetic diversity in Neandertals that lived 38,000 to 70,000 years ago was approximately one-third of that in contemporary modern humans. Together with analyses of mtDNA protein evolution, these data suggest that the long-term effective population size of Neandertals was smaller than that of modern humans and extant great apes.
Comment in
- Ancient DNA. Sequencing Neandertal mitochondrial genomes by the half-dozen.
Pennisi E. Pennisi E. Science. 2009 Jul 17;325(5938):252. doi: 10.1126/science.325_252. Science. 2009. PMID: 19608883 No abstract available.
Similar articles
- Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources.
Briggs AW, Good JM, Green RE, Krause J, Maricic T, Stenzel U, Pääbo S. Briggs AW, et al. J Vis Exp. 2009 Sep 3;(31):1573. doi: 10.3791/1573. J Vis Exp. 2009. PMID: 19730410 Free PMC article. - Ancient DNA. Sequencing Neandertal mitochondrial genomes by the half-dozen.
Pennisi E. Pennisi E. Science. 2009 Jul 17;325(5938):252. doi: 10.1126/science.325_252. Science. 2009. PMID: 19608883 No abstract available. - A complete Neandertal mitochondrial genome sequence determined by high-throughput sequencing.
Green RE, Malaspinas AS, Krause J, Briggs AW, Johnson PL, Uhler C, Meyer M, Good JM, Maricic T, Stenzel U, Prüfer K, Siebauer M, Burbano HA, Ronan M, Rothberg JM, Egholm M, Rudan P, Brajković D, Kućan Z, Gusić I, Wikström M, Laakkonen L, Kelso J, Slatkin M, Pääbo S. Green RE, et al. Cell. 2008 Aug 8;134(3):416-26. doi: 10.1016/j.cell.2008.06.021. Cell. 2008. PMID: 18692465 Free PMC article. - The Neandertal genome and ancient DNA authenticity.
Green RE, Briggs AW, Krause J, Prüfer K, Burbano HA, Siebauer M, Lachmann M, Pääbo S. Green RE, et al. EMBO J. 2009 Sep 2;28(17):2494-502. doi: 10.1038/emboj.2009.222. Epub 2009 Aug 6. EMBO J. 2009. PMID: 19661919 Free PMC article. Review. - Neandertal genetic diversity: a fresh look from old samples.
Excoffier L. Excoffier L. Curr Biol. 2006 Aug 22;16(16):R650-2. doi: 10.1016/j.cub.2006.07.035. Curr Biol. 2006. PMID: 16920617 Review.
Cited by
- Purifying Selection Influences the Comparison of Heterozygosities between Populations.
Subramanian S. Subramanian S. Biology (Basel). 2024 Oct 10;13(10):810. doi: 10.3390/biology13100810. Biology (Basel). 2024. PMID: 39452119 Free PMC article. - Life history and ancestry of the late Upper Palaeolithic infant from Grotta delle Mura, Italy.
Higgins OA, Modi A, Cannariato C, Diroma MA, Lugli F, Ricci S, Zaro V, Vai S, Vazzana A, Romandini M, Yu H, Boschin F, Magnone L, Rossini M, Di Domenico G, Baruffaldi F, Oxilia G, Bortolini E, Dellù E, Moroni A, Ronchitelli A, Talamo S, Müller W, Calattini M, Nava A, Posth C, Lari M, Bondioli L, Benazzi S, Caramelli D. Higgins OA, et al. Nat Commun. 2024 Sep 20;15(1):8248. doi: 10.1038/s41467-024-51150-x. Nat Commun. 2024. PMID: 39304646 Free PMC article. - Long genetic and social isolation in Neanderthals before their extinction.
Slimak L, Vimala T, Seguin-Orlando A, Metz L, Zanolli C, Joannes-Boyau R, Frouin M, Arnold LJ, Demuro M, Devièse T, Comeskey D, Buckley M, Camus H, Muth X, Lewis JE, Bocherens H, Yvorra P, Tenailleau C, Duployer B, Coqueugniot H, Dutour O, Higham T, Sikora M. Slimak L, et al. Cell Genom. 2024 Sep 11;4(9):100593. doi: 10.1016/j.xgen.2024.100593. Cell Genom. 2024. PMID: 39265525 Free PMC article. - Kaspar Hauser's alleged noble origin - New molecular genetic analyses resolve the controversy.
Parson W, Amory C, King T, Preick M, Berger C, König A, Huber G, Anslinger K, Bayer B, Weichhold G, Sänger T, Lutz-Bonengel S, Pfeiffer H, Hofreiter M, Pfründer D, Hohoff C, Brinkmann B. Parson W, et al. iScience. 2024 Jul 20;27(9):110539. doi: 10.1016/j.isci.2024.110539. eCollection 2024 Sep 20. iScience. 2024. PMID: 39246441 Free PMC article. - The role of emerging elites in the formation and development of communities after the fall of the Roman Empire.
Tian Y, Koncz I, Defant S, Giostra C, Vyas DN, Sołtysiak A, Pejrani Baricco L, Fetner R, Posth C, Brandt G, Bedini E, Modi A, Lari M, Vai S, Francalacci P, Fernandes R, Steinhof A, Pohl W, Caramelli D, Krause J, Izdebski A, Geary PJ, Veeramah KR. Tian Y, et al. Proc Natl Acad Sci U S A. 2024 Sep 3;121(36):e2317868121. doi: 10.1073/pnas.2317868121. Epub 2024 Aug 19. Proc Natl Acad Sci U S A. 2024. PMID: 39159385 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources