Detection of novel sequences related to african Swine Fever virus in human serum and sewage - PubMed (original) (raw)

FIG. 3.

Phylogenetic analysis of novel viral sequences. Translated novel viral sequences similar to ASFV (A) DNA polymerase, (B) RNA polymerase, and (C) topoisomerase II were compared to corresponding sequences from dsDNA viruses and high-scoring nonviral BLAST matches as described in the legend to Fig. 2. Sequences are shown in color as follows: asfarviruses, red; mimivirus, brown; poxviruses, purple; herpesviruses, gray; phycodnaviruses, green; ascoviruses, orange; iridoviruses, blue; nonviral BLAST matches, black. Bootstrap values over 65% are shown. In panel A, virus intrafamily subclassifications are also shown where applicable. For panels B and C, virus families for which the corresponding RNA polymerase and topoisomerase II sequences could not be identified by BLAST were omitted from the analyses. GenBank accession numbers for the sequences analyzed are provided in the “Supplemental methods” section of the supplemental material. Abbreviations: AmEPV, Amsacta moorei entomopoxvirus; APMV, Acanthamoeba polyphaga mimivirus; ATCV1, Acanthocystis turfacea chlorella virus 1; CIV, Chilo iridescent virus; CVM1, chlorella virus Marburg 1; D. autotrophicum, Desulfobacterium autotrophicum; DpAV4, Diadromus pulchellus ascovirus 4; EBV, Epstein-Barr virus; EhV86, Emiliania huxleyi virus isolate 86; ESV, Ectocarpus siliculosus virus; FsV158, Feldmannia species virus isolate 158; G. anomala, Glugea anomala; H. andersenii, Hemiselmis andersenii; H. butylicus, Hyperthermus butylicus; HCMV, human cytomegalovirus; HHV6, human herpesvirus 6; HSV1, herpes simplex virus type 1; HSV2, herpes simplex virus type 2; HvAV3, Heliothis virescens ascovirus 3; I. scapularis, Ixodes scapularis; ISKNV, infectious spleen and kidney necrosis virus; K. JI2008, Kabatana sp. strain JI2008; KSHV, Kaposi's sarcoma-associated herpesvirus; L. acerinae, Loma acerinae; LDV, lymphocystis disease virus; LSDV, lumpy skin disease virus; M. labreanum, Methanocorpusculum labreanum; M. marisnigri, Methanoculleus marisnigri; MIV, mosquito (Aedes taeniorhynchus) iridescent virus; MsEPV, Melanoplus sanguinipes entomopoxvirus; OSGIV, orange-spotted grouper iridovirus; OsV5, Ostreococcus virus 5; PBCV1, Paramecium bursaria chlorella virus 1; S. islandicus, “_Sulfolobus islandicus_”; SfAV1, Spodoptera frugiperda ascovirus 1; SGIV, Singapore grouper iridovirus; TFV, tiger frog virus; TnAV2c, Trichoplusia ni ascovirus 2c; VZV, varicella-zoster virus; YMTV, Yaba monkey tumor virus. Other abbreviations are as defined for Fig. 2.