DNA demethylation in hormone-induced transcriptional derepression - PubMed (original) (raw)
. 2009 Oct 15;461(7266):1007-12.
doi: 10.1038/nature08456.
Takeshi Kondo, Ichiro Takada, Min-Young Youn, Yoko Yamamoto, Sayuri Takahashi, Takahiro Matsumoto, Sally Fujiyama, Yuko Shirode, Ikuko Yamaoka, Hirochika Kitagawa, Ken-ichi Takeyama, Hiroshi Shibuya, Fumiaki Ohtake, Shigeaki Kato
Affiliations
- PMID: 19829383
- DOI: 10.1038/nature08456
DNA demethylation in hormone-induced transcriptional derepression
Mi-Sun Kim et al. Nature. 2009.
Erratum in
- Nature. 2011 Dec 1;480(7375):132
Retraction in
- Retraction: DNA demethylation in hormone-induced transcriptional derepression.
Kim MS, Kondo T, Takada I, Youn MY, Yamamoto Y, Takahashi S, Matsumoto T, Fujiyama S, Shirode Y, Yamaoka I, Kitagawa H, Takeyama K, Shibuya H, Ohtake F, Kato S. Kim MS, et al. Nature. 2012 Jun 13;486(7402):280. doi: 10.1038/nature11164. Nature. 2012. PMID: 22699624 No abstract available.
Abstract
Epigenetic modifications at the histone level affect gene regulation in response to extracellular signals. However, regulated epigenetic modifications at the DNA level, especially active DNA demethylation, in gene activation are not well understood. Here we report that DNA methylation/demethylation is hormonally switched to control transcription of the cytochrome p450 27B1 (CYP27B1) gene. Reflecting vitamin-D-mediated transrepression of the CYP27B1 gene by the negative vitamin D response element (nVDRE), methylation of CpG sites ((5m)CpG) is induced by vitamin D in this gene promoter. Conversely, treatment with parathyroid hormone, a hormone known to activate the CYP27B1 gene, induces active demethylation of the (5m)CpG sites in this promoter. Biochemical purification of a complex associated with the nVDRE-binding protein (VDIR, also known as TCF3) identified two DNA methyltransferases, DNMT1 and DNMT3B, for methylation of CpG sites, as well as a DNA glycosylase, MBD4 (ref. 10). Protein-kinase-C-phosphorylated MBD4 by parathyroid hormone stimulation promotes incision of methylated DNA through glycosylase activity, and a base-excision repair process seems to complete DNA demethylation in the MBD4-bound promoter. Such parathyroid-hormone-induced DNA demethylation and subsequent transcriptional derepression are impaired in Mbd4(-/-) mice. Thus, the present findings suggest that methylation switching at the DNA level contributes to the hormonal control of transcription.
Similar articles
- MBD4 cooperates with DNMT1 to mediate methyl-DNA repression and protects mammalian cells from oxidative stress.
Laget S, Miotto B, Chin HG, Estève PO, Roberts RJ, Pradhan S, Defossez PA. Laget S, et al. Epigenetics. 2014 Apr;9(4):546-56. doi: 10.4161/epi.27695. Epub 2014 Jan 16. Epigenetics. 2014. PMID: 24434851 Free PMC article. - Hormonal gene regulation through DNA methylation and demethylation.
Kouzmenko A, Ohtake F, Fujiki R, Kato S. Kouzmenko A, et al. Epigenomics. 2010 Dec;2(6):765-74. doi: 10.2217/epi.10.58. Epigenomics. 2010. PMID: 22122081 Review. - Aldosterone reprograms promoter methylation to regulate αENaC transcription in the collecting duct.
Yu Z, Kong Q, Kone BC. Yu Z, et al. Am J Physiol Renal Physiol. 2013 Oct 1;305(7):F1006-13. doi: 10.1152/ajprenal.00407.2013. Epub 2013 Aug 7. Am J Physiol Renal Physiol. 2013. PMID: 23926181 Free PMC article. - DNMT1 cooperates with MBD4 to inhibit the expression of Glucocorticoid-induced TNFR-related protein in human T cells.
Wang S, Li Y, Zhu F, Lin F, Luo X, Zhao B, Zhang P, Li D, Gao Y, Liang R, Liu L, Tsun A, Yuan X, Wu K, Li B. Wang S, et al. FEBS Lett. 2017 Jul;591(13):1929-1939. doi: 10.1002/1873-3468.12690. Epub 2017 Jun 10. FEBS Lett. 2017. PMID: 28542810 - Role of base excision repair in maintaining the genetic and epigenetic integrity of CpG sites.
Bellacosa A, Drohat AC. Bellacosa A, et al. DNA Repair (Amst). 2015 Aug;32:33-42. doi: 10.1016/j.dnarep.2015.04.011. Epub 2015 May 1. DNA Repair (Amst). 2015. PMID: 26021671 Free PMC article. Review.
Cited by
- MBD4 loss results in global reactivation of promoters and retroelements with low methylated CpG density.
Papin C, Ibrahim A, Sabir JSM, Le Gras S, Stoll I, Albiheyri RS, Zari AT, Bahieldin A, Bellacosa A, Bronner C, Hamiche A. Papin C, et al. J Exp Clin Cancer Res. 2023 Nov 14;42(1):301. doi: 10.1186/s13046-023-02882-z. J Exp Clin Cancer Res. 2023. PMID: 37957685 Free PMC article. - Hypermethylation of Smad7 in CD4+ T cells is associated with the disease activity of rheumatoid arthritis.
Hu Y, Xu B, He J, Shan H, Zhou G, Wang D, Bai L, Shang H, Nie L, Pan F, Lan HY, Wang Q. Hu Y, et al. Front Immunol. 2023 Feb 9;14:1104881. doi: 10.3389/fimmu.2023.1104881. eCollection 2023. Front Immunol. 2023. PMID: 36845150 Free PMC article. - Noncatalytic Domains in DNA Glycosylases.
Torgasheva NA, Diatlova EA, Grin IR, Endutkin AV, Mechetin GV, Vokhtantsev IP, Yudkina AV, Zharkov DO. Torgasheva NA, et al. Int J Mol Sci. 2022 Jun 30;23(13):7286. doi: 10.3390/ijms23137286. Int J Mol Sci. 2022. PMID: 35806289 Free PMC article. Review. - Unravelling the Role of Epigenetic Modifications in Development and Reproduction of Angiosperms: A Critical Appraisal.
Kumari P, Khan S, Wani IA, Gupta R, Verma S, Alam P, Alaklabi A. Kumari P, et al. Front Genet. 2022 May 18;13:819941. doi: 10.3389/fgene.2022.819941. eCollection 2022. Front Genet. 2022. PMID: 35664328 Free PMC article. Review. - Site-Specific DNA Demethylation as a Potential Target for Cancer Epigenetic Therapy.
Neja SA. Neja SA. Epigenet Insights. 2020 Oct 21;13:2516865720964808. doi: 10.1177/2516865720964808. eCollection 2020. Epigenet Insights. 2020. PMID: 35036833 Free PMC article. Review.
References
- Eur J Biochem. 2001 Jan;268(1):1-6 - PubMed
- Nature. 2004 May 27;429(6990):457-63 - PubMed
- EMBO J. 2004 Apr 7;23(7):1598-608 - PubMed
- Nature. 2002 Apr 4;416(6880):552-6 - PubMed
- Nat Genet. 2000 Jan;24(1):88-91 - PubMed
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases