The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals - PubMed (original) (raw)
The resolution dependence of optimal exposures in liquid nitrogen temperature electron cryomicroscopy of catalase crystals
Lindsay A Baker et al. J Struct Biol. 2010 Mar.
Abstract
Electron beam damage is the fundamental limit to resolution in electron cryomicroscopy (cryo-EM) of frozen, hydrated specimens. Radiation damage increases with the number of electrons used to obtain an image and affects information at higher spatial frequencies before low-resolution information. For the experimentalist, a balance exists between electron exposures sufficient to obtain a useful signal-to-noise ratio (SNR) in images and exposures that limit the damage to structural features. In single particle cryo-EM this balance is particularly delicate: low-resolution features must be imaged with a sufficient SNR to allow image alignment so that high-resolution features recorded below the noise level can be recovered by averaging independent images. By measuring the fading of Fourier components from images obtained at 200 kV of thin crystals of catalase embedded in ice, we have determined the electron exposures that will maximize the SNR at resolutions between 86 and 2.9A. These data allow for a rational choice of exposure for single particle cryo-EM. For example, for 20A resolution, the SNR is maximized at approximately 20e(-)/A(2), whereas for 3A resolution, it is maximized at approximately 10 e(-)/A(2). We illustrate the effects of exposure in single particle cryo-EM with data collected at approximately 12-15 and approximately 24-30 e(-)/A(2).
(c) 2009 Elsevier Inc. All rights reserved.
Similar articles
- Obtaining high-resolution images of biological macromolecules by using a cryo-electron microscope with a liquid-helium cooled stage.
Mitsuoka K. Mitsuoka K. Micron. 2011 Feb;42(2):100-6. doi: 10.1016/j.micron.2010.08.006. Epub 2010 Sep 8. Micron. 2011. PMID: 20869255 Review. - Radiation damage in electron cryomicroscopy.
Baker LA, Rubinstein JL. Baker LA, et al. Methods Enzymol. 2010;481:371-88. doi: 10.1016/S0076-6879(10)81015-8. Methods Enzymol. 2010. PMID: 20887865 - Evaluation of a 2k CCD camera with an epitaxially grown CsI scintillator for recording energy-filtered electron cryo-micrographs.
Yasunaga T, Wakabayashi T. Yasunaga T, et al. J Electron Microsc (Tokyo). 2008 Jun;57(3):101-12. doi: 10.1093/jmicro/dfn006. Epub 2008 May 8. J Electron Microsc (Tokyo). 2008. PMID: 18467743 - Sharpening high resolution information in single particle electron cryomicroscopy.
Fernández JJ, Luque D, Castón JR, Carrascosa JL. Fernández JJ, et al. J Struct Biol. 2008 Oct;164(1):170-5. doi: 10.1016/j.jsb.2008.05.010. Epub 2008 Jun 3. J Struct Biol. 2008. PMID: 18614378 - Retrospective: radiation damage and its associated "information limitations".
Glaeser RM. Glaeser RM. J Struct Biol. 2008 Sep;163(3):271-6. doi: 10.1016/j.jsb.2008.06.001. Epub 2008 Jun 8. J Struct Biol. 2008. PMID: 18588985 Review.
Cited by
- High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector.
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Czarnik C, Gulati S, Lander GC, Verba KA. Chan LM, et al. J Struct Biol. 2024 Sep;216(3):108108. doi: 10.1016/j.jsb.2024.108108. Epub 2024 Jun 27. J Struct Biol. 2024. PMID: 38944401 - High-resolution single-particle imaging at 100-200 keV with the Gatan Alpine direct electron detector.
Chan LM, Courteau BJ, Maker A, Wu M, Basanta B, Mehmood H, Bulkley D, Joyce D, Lee BC, Mick S, Gulati S, Lander GC, Verba KA. Chan LM, et al. bioRxiv [Preprint]. 2024 Feb 23:2024.02.14.580363. doi: 10.1101/2024.02.14.580363. bioRxiv. 2024. PMID: 38405886 Free PMC article. Updated. Preprint. - A minority of final stacks yields superior amplitude in single-particle cryo-EM.
Zhu J, Zhang Q, Zhang H, Shi Z, Hu M, Bao C. Zhu J, et al. Nat Commun. 2023 Dec 10;14(1):7822. doi: 10.1038/s41467-023-43555-x. Nat Commun. 2023. PMID: 38072910 Free PMC article. - Analysis and comparison of electron radiation damage assessments in Cryo-EM by single particle analysis and micro-crystal electron diffraction.
Shi D, Huang R. Shi D, et al. Front Mol Biosci. 2022 Oct 5;9:988928. doi: 10.3389/fmolb.2022.988928. eCollection 2022. Front Mol Biosci. 2022. PMID: 36275612 Free PMC article. Review. - Cryo-electron tomography related radiation-damage parameters for individual-molecule 3D structure determination.
Xue H, Zhang M, Liu J, Wang J, Ren G. Xue H, et al. Front Chem. 2022 Aug 30;10:889203. doi: 10.3389/fchem.2022.889203. eCollection 2022. Front Chem. 2022. PMID: 36110139 Free PMC article. Review.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources