A comprehensive glossary of autophagy-related molecules and processes - PubMed (original) (raw)
doi: 10.4161/auto.6.4.12244. Epub 2010 May 16.
Patrice Codogno, Ana Maria Cuervo, Vojo Deretic, Zvulun Elazar, Juan Fueyo-Margareto, David A Gewirtz, Guido Kroemer, Beth Levine, Noboru Mizushima, David C Rubinsztein, Michael Thumm, Sharon A Tooze
Affiliations
- PMID: 20484971
- PMCID: PMC3652604
- DOI: 10.4161/auto.6.4.12244
A comprehensive glossary of autophagy-related molecules and processes
Daniel J Klionsky et al. Autophagy. 2010 May.
Abstract
Autophagy is a rapidly expanding field in the sense that our knowledge about the molecular mechanism and its connections to a wide range of physiological processes has increased substantially in the past decade. Similarly, the vocabulary associated with autophagy has grown concomitantly. This fact makes it difficult for readers, even those who work in the field, to keep up with the ever-expanding terminology associated with the various autophagy-related processes. Accordingly, we have developed a comprehensive glossary of autophagy-related terms that is meant to provide a quick reference for researchers who need a brief reminder of the regulatory effects of transcription factors or chemical agents that induce or inhibit autophagy, the function of the autophagy-related proteins, or the role of accessory machinery or structures that are associated with autophagy.
Similar articles
- A comprehensive glossary of autophagy-related molecules and processes (2nd edition).
Klionsky DJ, Baehrecke EH, Brumell JH, Chu CT, Codogno P, Cuervo AM, Debnath J, Deretic V, Elazar Z, Eskelinen EL, Finkbeiner S, Fueyo-Margareto J, Gewirtz D, Jäättelä M, Kroemer G, Levine B, Melia TJ, Mizushima N, Rubinsztein DC, Simonsen A, Thorburn A, Thumm M, Tooze SA. Klionsky DJ, et al. Autophagy. 2011 Nov;7(11):1273-94. doi: 10.4161/auto.7.11.17661. Epub 2011 Nov 1. Autophagy. 2011. PMID: 21997368 Free PMC article. - A glossary for biometeorology.
Gosling SN, Bryce EK, Dixon PG, Gabriel KM, Gosling EY, Hanes JM, Hondula DM, Liang L, Bustos Mac Lean PA, Muthers S, Nascimento ST, Petralli M, Vanos JK, Wanka ER. Gosling SN, et al. Int J Biometeorol. 2014 Mar;58(2):277-308. doi: 10.1007/s00484-013-0729-9. Epub 2014 Feb 19. Int J Biometeorol. 2014. PMID: 24550042 Free PMC article. - Apoptosis and autophagy: regulatory connections between two supposedly different processes.
Thorburn A. Thorburn A. Apoptosis. 2008 Jan;13(1):1-9. doi: 10.1007/s10495-007-0154-9. Apoptosis. 2008. PMID: 17990121 Free PMC article. Review. - Glossary of reference terms for alternative test methods and their validation.
Ferrario D, Brustio R, Hartung T. Ferrario D, et al. ALTEX. 2014;31(3):319-35. doi: 10.14573/altex.1403311. Epub 2014 May 7. ALTEX. 2014. PMID: 24819604 - Methods for monitoring autophagy from yeast to human.
Klionsky DJ, Cuervo AM, Seglen PO. Klionsky DJ, et al. Autophagy. 2007 May-Jun;3(3):181-206. doi: 10.4161/auto.3678. Epub 2007 May 4. Autophagy. 2007. PMID: 17224625 Review.
Cited by
- Nitrite Therapy Ameliorates Myocardial Dysfunction via H2S and Nuclear Factor-Erythroid 2-Related Factor 2 (Nrf2)-Dependent Signaling in Chronic Heart Failure.
Donnarumma E, Bhushan S, Bradley JM, Otsuka H, Donnelly EL, Lefer DJ, Islam KN. Donnarumma E, et al. J Am Heart Assoc. 2016 Jul 29;5(8):e003551. doi: 10.1161/JAHA.116.003551. J Am Heart Assoc. 2016. PMID: 27473036 Free PMC article. - Disorders of lysosomal acidification-The emerging role of v-ATPase in aging and neurodegenerative disease.
Colacurcio DJ, Nixon RA. Colacurcio DJ, et al. Ageing Res Rev. 2016 Dec;32:75-88. doi: 10.1016/j.arr.2016.05.004. Epub 2016 May 16. Ageing Res Rev. 2016. PMID: 27197071 Free PMC article. Review. - Advances in the role and mechanism of BAG3 in dilated cardiomyopathy.
Liu L, Sun K, Zhang X, Tang Y, Xu D. Liu L, et al. Heart Fail Rev. 2021 Jan;26(1):183-194. doi: 10.1007/s10741-019-09899-7. Heart Fail Rev. 2021. PMID: 31808029 Review. - Subversion of cellular autophagy machinery by hepatitis B virus for viral envelopment.
Li J, Liu Y, Wang Z, Liu K, Wang Y, Liu J, Ding H, Yuan Z. Li J, et al. J Virol. 2011 Jul;85(13):6319-33. doi: 10.1128/JVI.02627-10. Epub 2011 Apr 20. J Virol. 2011. PMID: 21507968 Free PMC article. - cPKCγ-Modulated Sequential Reactivation of mTOR Inhibited Autophagic Flux in Neurons Exposed to Oxygen Glucose Deprivation/Reperfusion.
Hua R, Han S, Zhang N, Dai Q, Liu T, Li J. Hua R, et al. Int J Mol Sci. 2018 May 6;19(5):1380. doi: 10.3390/ijms19051380. Int J Mol Sci. 2018. PMID: 29734780 Free PMC article.
References
- Overbye A, Fengsrud M, Seglen PO. Proteomic analysis of membrane-associated proteins from rat liver autophagosomes. Autophagy. 2007;3:300–22. - PubMed
- Noda NN, Ohsumi Y, Inagaki F. Atg8-family interacting motif crucial for selective autophagy. FEBS Lett. 2010;584:1379–85. - PubMed
- Simonsen A, Birkeland HC, Gillooly DJ, Mizushima N, Kuma A, Yoshimori T, et al. Alfy, a novel FYVE-domain-containing protein associated with protein granules and autophagic membranes. J Cell Sci. 2004;117:4239–51. - PubMed
Publication types
MeSH terms
Substances
Grants and funding
- HHMI/Howard Hughes Medical Institute/United States
- R01 GM053396/GM/NIGMS NIH HHS/United States
- R37 AI042999/AI/NIAID NIH HHS/United States
- G0600194/MRC_/Medical Research Council/United Kingdom
- R01 AI042999/AI/NIAID NIH HHS/United States
LinkOut - more resources
Full Text Sources
Other Literature Sources
Miscellaneous