Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability - PubMed (original) (raw)
. 2011 Feb 17;470(7334):419-23.
doi: 10.1038/nature09672. Epub 2011 Jan 30.
Christophe Kunz, Jim Selfridge, Teresa Lettieri, Yusuke Saito, Eilidh MacDougall, Annika Wirz, David Schuermann, Angelika L Jacobs, Fredy Siegrist, Roland Steinacher, Josef Jiricny, Adrian Bird, Primo Schär
Affiliations
- PMID: 21278727
- DOI: 10.1038/nature09672
Embryonic lethal phenotype reveals a function of TDG in maintaining epigenetic stability
Daniel Cortázar et al. Nature. 2011.
Abstract
Thymine DNA glycosylase (TDG) is a member of the uracil DNA glycosylase (UDG) superfamily of DNA repair enzymes. Owing to its ability to excise thymine when mispaired with guanine, it was proposed to act against the mutability of 5-methylcytosine (5-mC) deamination in mammalian DNA. However, TDG was also found to interact with transcription factors, histone acetyltransferases and de novo DNA methyltransferases, and it has been associated with DNA demethylation in gene promoters following activation of transcription, altogether implicating an engagement in gene regulation rather than DNA repair. Here we use a mouse genetic approach to determine the biological function of this multifaceted DNA repair enzyme. We find that, unlike other DNA glycosylases, TDG is essential for embryonic development, and that this phenotype is associated with epigenetic aberrations affecting the expression of developmental genes. Fibroblasts derived from Tdg null embryos (mouse embryonic fibroblasts, MEFs) show impaired gene regulation, coincident with imbalanced histone modification and CpG methylation at promoters of affected genes. TDG associates with the promoters of such genes both in fibroblasts and in embryonic stem cells (ESCs), but epigenetic aberrations only appear upon cell lineage commitment. We show that TDG contributes to the maintenance of active and bivalent chromatin throughout cell differentiation, facilitating a proper assembly of chromatin-modifying complexes and initiating base excision repair to counter aberrant de novo methylation. We thus conclude that TDG-dependent DNA repair has evolved to provide epigenetic stability in lineage committed cells.
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References
- DNA Repair (Amst). 2003 Sep 18;2(9):955-69 - PubMed
- J Biol Chem. 2003 Oct 3;278(40):38586-92 - PubMed
- Cancer Res. 2006 Jun 15;66(12):6080-6 - PubMed
- J Biol Chem. 2000 Oct 27;275(43):33449-56 - PubMed
- Nature. 2005 Apr 14;434(7035):913-7 - PubMed
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