Are transposable element insertions homoplasy free?: an examination using the avian tree of life - PubMed (original) (raw)
doi: 10.1093/sysbio/syq100. Epub 2011 Feb 8.
Edward L Braun, Rebecca T Kimball, Sushma Reddy, Rauri C K Bowie, Michael J Braun, Jena L Chojnowski, Shannon J Hackett, John Harshman, Christopher J Huddleston, Ben D Marks, Kathleen J Miglia, William S Moore, Frederick H Sheldon, David W Steadman, Christopher C Witt, Tamaki Yuri
Affiliations
- PMID: 21303823
- DOI: 10.1093/sysbio/syq100
Are transposable element insertions homoplasy free?: an examination using the avian tree of life
Kin-Lan Han et al. Syst Biol. 2011 May.
No abstract available
Similar articles
- A phylogenomic study of birds reveals their evolutionary history.
Hackett SJ, Kimball RT, Reddy S, Bowie RC, Braun EL, Braun MJ, Chojnowski JL, Cox WA, Han KL, Harshman J, Huddleston CJ, Marks BD, Miglia KJ, Moore WS, Sheldon FH, Steadman DW, Witt CC, Yuri T. Hackett SJ, et al. Science. 2008 Jun 27;320(5884):1763-8. doi: 10.1126/science.1157704. Science. 2008. PMID: 18583609 - Introns outperform exons in analyses of basal avian phylogeny using clathrin heavy chain genes.
Chojnowski JL, Kimball RT, Braun EL. Chojnowski JL, et al. Gene. 2008 Feb 29;410(1):89-96. doi: 10.1016/j.gene.2007.11.016. Epub 2007 Dec 7. Gene. 2008. PMID: 18191344 - Evolution. Building the tree of life, genome by genome.
Pennisi E. Pennisi E. Science. 2008 Jun 27;320(5884):1716-7. doi: 10.1126/science.320.5884.1716. Science. 2008. PMID: 18583591 No abstract available. - The evolution of birds: an overview of the avian tree of life.
Bennu DA. Bennu DA. Lab Anim (NY). 2004 May;33(5):42-8. doi: 10.1038/laban0504-42. Lab Anim (NY). 2004. PMID: 15141246 Review. - Plant transposable elements: where genetics meets genomics.
Feschotte C, Jiang N, Wessler SR. Feschotte C, et al. Nat Rev Genet. 2002 May;3(5):329-41. doi: 10.1038/nrg793. Nat Rev Genet. 2002. PMID: 11988759 Review.
Cited by
- A region of suppressed recombination misleads neoavian phylogenomics.
Mirarab S, Rivas-González I, Feng S, Stiller J, Fang Q, Mai U, Hickey G, Chen G, Brajuka N, Fedrigo O, Formenti G, Wolf JBW, Howe K, Antunes A, Schierup MH, Paten B, Jarvis ED, Zhang G, Braun EL. Mirarab S, et al. Proc Natl Acad Sci U S A. 2024 Apr 9;121(15):e2319506121. doi: 10.1073/pnas.2319506121. Epub 2024 Apr 1. Proc Natl Acad Sci U S A. 2024. PMID: 38557186 Free PMC article. - Champagne: Automated Whole-Genome Phylogenomic Character Matrix Method Using Large Genomic Indels for Homoplasy-Free Inference.
Schull JK, Turakhia Y, Hemker JA, Dally WJ, Bejerano G. Schull JK, et al. Genome Biol Evol. 2022 Mar 2;14(3):evac013. doi: 10.1093/gbe/evac013. Genome Biol Evol. 2022. PMID: 35171243 Free PMC article. - Disentangling the determinants of transposable elements dynamics in vertebrate genomes using empirical evidences and simulations.
Bourgeois Y, Ruggiero RP, Hariyani I, Boissinot S. Bourgeois Y, et al. PLoS Genet. 2020 Oct 5;16(10):e1009082. doi: 10.1371/journal.pgen.1009082. eCollection 2020 Oct. PLoS Genet. 2020. PMID: 33017388 Free PMC article. - Optimizing Phylogenomics with Rapidly Evolving Long Exons: Comparison with Anchored Hybrid Enrichment and Ultraconserved Elements.
Karin BR, Gamble T, Jackman TR. Karin BR, et al. Mol Biol Evol. 2020 Mar 1;37(3):904-922. doi: 10.1093/molbev/msz263. Mol Biol Evol. 2020. PMID: 31710677 Free PMC article. - Differential retention of transposable element-derived sequences in outcrossing Arabidopsis genomes.
Legrand S, Caron T, Maumus F, Schvartzman S, Quadrana L, Durand E, Gallina S, Pauwels M, Mazoyer C, Huyghe L, Colot V, Hanikenne M, Castric V. Legrand S, et al. Mob DNA. 2019 Jul 17;10:30. doi: 10.1186/s13100-019-0171-6. eCollection 2019. Mob DNA. 2019. PMID: 31346350 Free PMC article.
Publication types
MeSH terms
Substances
LinkOut - more resources
Full Text Sources