Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes - PubMed (original) (raw)
doi: 10.1038/ng.825. Epub 2011 May 1.
Umut Akinci, Jan Christian Bryne, Jun Hou, Cristina Gontan, Maaike Moen, Dorota Szumska, Christel Kockx, Wilfred van Ijcken, Dick H W Dekkers, Jeroen Demmers, Erik-Jan Rijkers, Shoumo Bhattacharya, Sjaak Philipsen, Larysa H Pevny, Frank G Grosveld, Robbert J Rottier, Boris Lenhard, Raymond A Poot
Affiliations
- PMID: 21532573
- DOI: 10.1038/ng.825
Sox2 cooperates with Chd7 to regulate genes that are mutated in human syndromes
Erik Engelen et al. Nat Genet. 2011 Jun.
Abstract
The HMG-box transcription factor Sox2 plays a role throughout neurogenesis and also acts at other stages of development, as illustrated by the multiple organs affected in the anophthalmia syndrome caused by SOX2 mutations. Here we combined proteomic and genomic approaches to characterize gene regulation by Sox2 in neural stem cells. Chd7, a chromatin remodeling ATPase associated with CHARGE syndrome, was identified as a Sox2 transcriptional cofactor. Sox2 and Chd7 physically interact, have overlapping genome-wide binding sites and regulate a set of common target genes including Jag1, Gli3 and Mycn, genes mutated in Alagille, Pallister-Hall and Feingold syndromes, which show malformations also associated with SOX2 anophthalmia syndrome or CHARGE syndrome. Regulation of disease-associated genes by a Sox2-Chd7 complex provides a plausible explanation for several malformations associated with SOX2 anophthalmia syndrome or CHARGE syndrome. Indeed, we found that Chd7-haploinsufficient embryos showed severely reduced expression of Jag1 in the developing inner ear.
Comment in
- SOX2 and CHD7 cooperatively regulate human disease genes.
Puc J, Rosenfeld MG. Puc J, et al. Nat Genet. 2011 Jun;43(6):505-6. doi: 10.1038/ng.843. Nat Genet. 2011. PMID: 21614087 No abstract available.
Similar articles
- Jagged 1 regulates the restriction of Sox2 expression in the developing chicken inner ear: a mechanism for sensory organ specification.
Neves J, Parada C, Chamizo M, Giráldez F. Neves J, et al. Development. 2011 Feb;138(4):735-44. doi: 10.1242/dev.060657. Development. 2011. PMID: 21266409 - The Notch ligand JAG1 is required for sensory progenitor development in the mammalian inner ear.
Kiernan AE, Xu J, Gridley T. Kiernan AE, et al. PLoS Genet. 2006 Jan;2(1):e4. doi: 10.1371/journal.pgen.0020004. Epub 2006 Jan 13. PLoS Genet. 2006. PMID: 16410827 Free PMC article. - CHD7 and retinoic acid signaling cooperate to regulate neural stem cell and inner ear development in mouse models of CHARGE syndrome.
Micucci JA, Layman WS, Hurd EA, Sperry ED, Frank SF, Durham MA, Swiderski DL, Skidmore JM, Scacheri PC, Raphael Y, Martin DM. Micucci JA, et al. Hum Mol Genet. 2014 Jan 15;23(2):434-48. doi: 10.1093/hmg/ddt435. Epub 2013 Sep 10. Hum Mol Genet. 2014. PMID: 24026680 Free PMC article. - Patterning and cell fate in the inner ear: a case for Notch in the chicken embryo.
Neves J, Abelló G, Petrovic J, Giraldez F. Neves J, et al. Dev Growth Differ. 2013 Jan;55(1):96-112. doi: 10.1111/dgd.12016. Epub 2012 Dec 17. Dev Growth Differ. 2013. PMID: 23252974 Review. - Inner ear manifestations in CHARGE: Abnormalities, treatments, animal models, and progress toward treatments in auditory and vestibular structures.
Choo DI, Tawfik KO, Martin DM, Raphael Y. Choo DI, et al. Am J Med Genet C Semin Med Genet. 2017 Dec;175(4):439-449. doi: 10.1002/ajmg.c.31587. Epub 2017 Oct 30. Am J Med Genet C Semin Med Genet. 2017. PMID: 29082607 Free PMC article. Review.
Cited by
- CHARGE syndrome in a child with a CHD7 variant and a novel pathogenic SOX2 variant: A case report.
Kamimura M, Shima H, Suzuki E, Sogi C, Fujiwara I, Adachi M, Haruna H, Takubo N, Fukami M, Kikuchi A, Kanno J. Kamimura M, et al. Clin Pediatr Endocrinol. 2024 Oct;33(4):214-218. doi: 10.1297/cpe.2024-0006. Epub 2024 Jul 7. Clin Pediatr Endocrinol. 2024. PMID: 39359670 Free PMC article. - Comprehensive Analysis of the Expression, Prognosis, and Immune Infiltrates for Chromodomain-Helicase-DNA-Binding Proteins in Breast Tumor.
Hasanlu M, Amiri-Dashatan N, Farahani M, Koushki M, Ahmadi H, Parsamanesh N, Ahmadi NA. Hasanlu M, et al. Asian Pac J Cancer Prev. 2024 May 1;25(5):1547-1558. doi: 10.31557/APJCP.2024.25.5.1547. Asian Pac J Cancer Prev. 2024. PMID: 38809626 Free PMC article. - BRG1 establishes the neuroectodermal chromatin landscape to restrict dorsal cell fates.
Hoffman JA, Muse GW, Langer LF, Patterson AI, Gandara I, Ward JM, Archer TK. Hoffman JA, et al. Sci Adv. 2024 Mar;10(9):eadj5107. doi: 10.1126/sciadv.adj5107. Epub 2024 Mar 1. Sci Adv. 2024. PMID: 38427725 Free PMC article. - CHD7 and SOX2 act in a common gene regulatory network during mammalian semicircular canal and cochlear development.
Gao J, Skidmore JM, Cimerman J, Ritter KE, Qiu J, Wilson LMQ, Raphael Y, Kwan KY, Martin DM. Gao J, et al. Proc Natl Acad Sci U S A. 2024 Mar 5;121(10):e2311720121. doi: 10.1073/pnas.2311720121. Epub 2024 Feb 26. Proc Natl Acad Sci U S A. 2024. PMID: 38408234 Free PMC article. - Identification of the DNA methylation signature of Mowat-Wilson syndrome.
Caraffi SG, van der Laan L, Rooney K, Trajkova S, Zuntini R, Relator R, Haghshenas S, Levy MA, Baldo C, Mandrile G, Lauzon C, Cordelli DM, Ivanovski I, Fetta A, Sukarova E, Brusco A, Pavinato L, Pullano V, Zollino M, McConkey H, Tartaglia M, Ferrero GB, Sadikovic B, Garavelli L. Caraffi SG, et al. Eur J Hum Genet. 2024 Jun;32(6):619-629. doi: 10.1038/s41431-024-01548-4. Epub 2024 Feb 13. Eur J Hum Genet. 2024. PMID: 38351292 Free PMC article.
References
- Genes Dev. 2006 May 1;20(9):1187-202 - PubMed
- Nucleic Acids Res. 2004 Jan 1;32(Database issue):D552-6 - PubMed
- Cell Stem Cell. 2010 Apr 2;6(4):369-81 - PubMed
- Hum Mol Genet. 2005 Nov 15;14(22):3463-76 - PubMed
- Nucleic Acids Res. 2008 Sep;36(16):5221-31 - PubMed
Publication types
MeSH terms
Substances
Grants and funding
- PG/07/045/22690/BHF_/British Heart Foundation/United Kingdom
- PG/08/045/25069/BHF_/British Heart Foundation/United Kingdom
- RG/10/17/28553/BHF_/British Heart Foundation/United Kingdom
- CH/09/003/BHF_/British Heart Foundation/United Kingdom
- 090532/WT_/Wellcome Trust/United Kingdom
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases