Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line - PubMed (original) (raw)
Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line
Kamila Skalická et al. Am J Bot. 2003 Jul.
Free article
Abstract
Unidirectional gene conversion of rDNA units has occurred in the evolution of natural tobacco (Nicotiana tabacum). In this paper we report the use of the synthetic tobacco line Th37, 4n (N. sylvestris × N. tomentosiformis), to study early rDNA evolution associated with allopolyploidy. At least three classes of newly amplified rDNA unit variants were identified (17/20 plants). Their presence was often accompanied by near-complete elimination of N. tomentosiformis-donated rDNA units (15/20 plants). Novel rDNA units were of N. tomentosiformis-type and contained rearranged subrepeats in the intergenic spacer. The maternal N. sylvestris-derived units were unchanged, except for some alteration in the ratio of individual gene family members. A cytogenetic analysis revealed rDNA sites on N. sylvestris-derived chromosomes S10, S11, and S12 and N. tomentosiformis-derived chromosomes T3 and in some cases T4. An rDNA locus does not occur on N. tomentosiformis chromosome 4. The locus on chromosome T4 of some hybrids correlates with the occurrence of the novel units that probably amplified at the locus. Combined with an analysis of tobacco cultivars, the data indicate that an initial burst of rDNA evolution associated with allopolyploidy was followed by a slower process that led towards reduced complexity and a decreased number of rDNA variants.
Similar articles
- Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units.
Lim KY, Kovarik A, Matýăsek R, Bezdĕk M, Lichtenstein CP, Leitch AR. Lim KY, et al. Chromosoma. 2000 Jun;109(3):161-72. doi: 10.1007/s004120050424. Chromosoma. 2000. PMID: 10929194 - Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species.
Fulnecek J, Lim KY, Leitch AR, Kovarík A, Matyásek R. Fulnecek J, et al. Heredity (Edinb). 2002 Jan;88(1):19-25. doi: 10.1038/sj.hdy.6800001. Heredity (Edinb). 2002. PMID: 11813102 - Ribosomal DNA evolution and gene conversion in Nicotiana rustica.
Matyasek R, Lim KY, Kovarik A, Leitch AR. Matyasek R, et al. Heredity (Edinb). 2003 Sep;91(3):268-75. doi: 10.1038/sj.hdy.6800333. Heredity (Edinb). 2003. PMID: 12939628 - Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum.
Volkov RA, Borisjuk NV, Panchuk II, Schweizer D, Hemleben V. Volkov RA, et al. Mol Biol Evol. 1999 Mar;16(3):311-20. doi: 10.1093/oxfordjournals.molbev.a026112. Mol Biol Evol. 1999. PMID: 10331258 - The origin of tobacco's T genome is traced to a particular lineage within Nicotiana tomentosiformis (Solanaceae).
Murad L, Lim KY, Christopodulou V, Matyasek R, Lichtenstein CP, Kovarik A, Leitch AR. Murad L, et al. Am J Bot. 2002 Jun;89(6):921-8. doi: 10.3732/ajb.89.6.921. Am J Bot. 2002. PMID: 21665691
Cited by
- Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum).
Petit M, Lim KY, Julio E, Poncet C, Dorlhac de Borne F, Kovarik A, Leitch AR, Grandbastien MA, Mhiri C. Petit M, et al. Mol Genet Genomics. 2007 Jul;278(1):1-15. doi: 10.1007/s00438-007-0226-0. Epub 2007 Mar 21. Mol Genet Genomics. 2007. PMID: 17375323 - Relationships of the woody Medicago species (section Dendrotelis) assessed by molecular cytogenetic analyses.
Rosato M, Castro M, Rosselló JA. Rosato M, et al. Ann Bot. 2008 Jul;102(1):15-22. doi: 10.1093/aob/mcn055. Epub 2008 Apr 15. Ann Bot. 2008. PMID: 18413655 Free PMC article. - Similar patterns of rDNA evolution in synthetic and recently formed natural populations of Tragopogon (Asteraceae) allotetraploids.
Malinska H, Tate JA, Matyasek R, Leitch AR, Soltis DE, Soltis PS, Kovarik A. Malinska H, et al. BMC Evol Biol. 2010 Sep 22;10:291. doi: 10.1186/1471-2148-10-291. BMC Evol Biol. 2010. PMID: 20858289 Free PMC article. - Immediate unidirectional epigenetic reprogramming of NORs occurs independently of rDNA rearrangements in synthetic and natural forms of a polyploid species Brassica napus.
Książczyk T, Kovarik A, Eber F, Huteau V, Khaitova L, Tesarikova Z, Coriton O, Chèvre AM. Książczyk T, et al. Chromosoma. 2011 Dec;120(6):557-71. doi: 10.1007/s00412-011-0331-z. Epub 2011 Jul 23. Chromosoma. 2011. PMID: 21785942 - Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.
Matyášek R, Renny-Byfield S, Fulneček J, Macas J, Grandbastien MA, Nichols R, Leitch A, Kovařík A. Matyášek R, et al. BMC Genomics. 2012 Dec 23;13:722. doi: 10.1186/1471-2164-13-722. BMC Genomics. 2012. PMID: 23259460 Free PMC article.
LinkOut - more resources
Full Text Sources