Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line - PubMed (original) (raw)
Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line
Kamila Skalická et al. Am J Bot. 2003 Jul.
Free article
Abstract
Unidirectional gene conversion of rDNA units has occurred in the evolution of natural tobacco (Nicotiana tabacum). In this paper we report the use of the synthetic tobacco line Th37, 4n (N. sylvestris × N. tomentosiformis), to study early rDNA evolution associated with allopolyploidy. At least three classes of newly amplified rDNA unit variants were identified (17/20 plants). Their presence was often accompanied by near-complete elimination of N. tomentosiformis-donated rDNA units (15/20 plants). Novel rDNA units were of N. tomentosiformis-type and contained rearranged subrepeats in the intergenic spacer. The maternal N. sylvestris-derived units were unchanged, except for some alteration in the ratio of individual gene family members. A cytogenetic analysis revealed rDNA sites on N. sylvestris-derived chromosomes S10, S11, and S12 and N. tomentosiformis-derived chromosomes T3 and in some cases T4. An rDNA locus does not occur on N. tomentosiformis chromosome 4. The locus on chromosome T4 of some hybrids correlates with the occurrence of the novel units that probably amplified at the locus. Combined with an analysis of tobacco cultivars, the data indicate that an initial burst of rDNA evolution associated with allopolyploidy was followed by a slower process that led towards reduced complexity and a decreased number of rDNA variants.
Similar articles
- Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units.
Lim KY, Kovarik A, Matýăsek R, Bezdĕk M, Lichtenstein CP, Leitch AR. Lim KY, et al. Chromosoma. 2000 Jun;109(3):161-72. doi: 10.1007/s004120050424. Chromosoma. 2000. PMID: 10929194 - Evolution and structure of 5S rDNA loci in allotetraploid Nicotiana tabacum and its putative parental species.
Fulnecek J, Lim KY, Leitch AR, Kovarík A, Matyásek R. Fulnecek J, et al. Heredity (Edinb). 2002 Jan;88(1):19-25. doi: 10.1038/sj.hdy.6800001. Heredity (Edinb). 2002. PMID: 11813102 - Ribosomal DNA evolution and gene conversion in Nicotiana rustica.
Matyasek R, Lim KY, Kovarik A, Leitch AR. Matyasek R, et al. Heredity (Edinb). 2003 Sep;91(3):268-75. doi: 10.1038/sj.hdy.6800333. Heredity (Edinb). 2003. PMID: 12939628 - Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum.
Volkov RA, Borisjuk NV, Panchuk II, Schweizer D, Hemleben V. Volkov RA, et al. Mol Biol Evol. 1999 Mar;16(3):311-20. doi: 10.1093/oxfordjournals.molbev.a026112. Mol Biol Evol. 1999. PMID: 10331258 - The origin of tobacco's T genome is traced to a particular lineage within Nicotiana tomentosiformis (Solanaceae).
Murad L, Lim KY, Christopodulou V, Matyasek R, Lichtenstein CP, Kovarik A, Leitch AR. Murad L, et al. Am J Bot. 2002 Jun;89(6):921-8. doi: 10.3732/ajb.89.6.921. Am J Bot. 2002. PMID: 21665691
Cited by
- Intragenomic rDNA variation - the product of concerted evolution, mutation, or something in between?
Wang W, Zhang X, Garcia S, Leitch AR, Kovařík A. Wang W, et al. Heredity (Edinb). 2023 Sep;131(3):179-188. doi: 10.1038/s41437-023-00634-5. Epub 2023 Jul 4. Heredity (Edinb). 2023. PMID: 37402824 Free PMC article. Review. - Characterization of Genomic Inheritance of Intergeneric Hybrids between Ascocenda and Phalaenopsis Cultivars by GISH, PCR-RFLP and RFLP.
Liu WL, Shih HC, Weng IS, Ko YZ, Tsai CC, Chou CH, Chiang YC. Liu WL, et al. PLoS One. 2016 Apr 7;11(4):e0153512. doi: 10.1371/journal.pone.0153512. eCollection 2016. PLoS One. 2016. PMID: 27055268 Free PMC article. - The origin of exon 3 skipping of paternal GLOBOSA pre-mRNA in some Nicotiana tabacum lines correlates with a point mutation of the very last nucleotide of the exon.
Fulneček J, Matyášek R. Fulneček J, et al. Mol Genet Genomics. 2016 Apr;291(2):801-18. doi: 10.1007/s00438-015-1149-9. Epub 2015 Nov 25. Mol Genet Genomics. 2016. PMID: 26603606 - Next generation sequencing analysis reveals a relationship between rDNA unit diversity and locus number in Nicotiana diploids.
Matyášek R, Renny-Byfield S, Fulneček J, Macas J, Grandbastien MA, Nichols R, Leitch A, Kovařík A. Matyášek R, et al. BMC Genomics. 2012 Dec 23;13:722. doi: 10.1186/1471-2164-13-722. BMC Genomics. 2012. PMID: 23259460 Free PMC article. - Independent, rapid and targeted loss of highly repetitive DNA in natural and synthetic allopolyploids of Nicotiana tabacum.
Renny-Byfield S, Kovařík A, Chester M, Nichols RA, Macas J, Novák P, Leitch AR. Renny-Byfield S, et al. PLoS One. 2012;7(5):e36963. doi: 10.1371/journal.pone.0036963. Epub 2012 May 14. PLoS One. 2012. PMID: 22606317 Free PMC article.
LinkOut - more resources
Full Text Sources