SPREAD: spatial phylogenetic reconstruction of evolutionary dynamics - PubMed (original) (raw)

Human outbreaks of a novel reassortant Oropouche virus in the Brazilian Amazon region.

Naveca FG, Almeida TAP, Souza V, Nascimento V, Silva D, Nascimento F, Mejía M, Oliveira YS, Rocha L, Xavier N, Lopes J, Maito R, Meneses C, Amorim T, Fé L, Camelo FS, Silva SCA, Melo AX, Fernandes LG, Oliveira MAA, Arcanjo AR, Araújo G, André Júnior W, Carvalho RLC, Rodrigues R, Albuquerque S, Mattos C, Silva C, Linhares A, Rodrigues T, Mariscal F, Morais MA, Presibella MM, Marques NFQ, Paiva A, Ribeiro K, Vieira D, Queiroz JADS, Passos-Silva AM, Abdalla L, Santos JH, Figueiredo RMP, Cruz ACR, Casseb LN, Chiang JO, Frutuoso LV, Rossi A, Freitas L, Campos TL, Wallau GL, Moreira E, Lins Neto RD, Alexander LW, Sun Y, Filippis AMB, Gräf T, Arantes I, Bento AI, Delatorre E, Bello G. Naveca FG, et al. Nat Med. 2024 Dec;30(12):3509-3521. doi: 10.1038/s41591-024-03300-3. Epub 2024 Sep 18. Nat Med. 2024. PMID: 39293488

Emerging OP354-Like P[8] Rotaviruses Have Rapidly Dispersed from Asia to Other Continents.

Zeller M, Heylen E, Damanka S, Pietsch C, Donato C, Tamura T, Kulkarni R, Arora R, Cunliffe N, Maunula L, Potgieter C, Tamim S, Coster SD, Zhirakovskaya E, Bdour S, O'Shea H, Kirkwood CD, Seheri M, Nyaga MM, Mphahlele J, Chitambar SD, Dagan R, Armah G, Tikunova N, Van Ranst M, Matthijnssens J. Zeller M, et al. Mol Biol Evol. 2015 Aug;32(8):2060-71. doi: 10.1093/molbev/msv088. Epub 2015 Apr 8. Mol Biol Evol. 2015. PMID: 25858434 Free PMC article.

Genomics reveals historic and contemporary transmission dynamics of a bacterial disease among wildlife and livestock.

Kamath PL, Foster JT, Drees KP, Luikart G, Quance C, Anderson NJ, Clarke PR, Cole EK, Drew ML, Edwards WH, Rhyan JC, Treanor JJ, Wallen RL, White PJ, Robbe-Austerman S, Cross PC. Kamath PL, et al. Nat Commun. 2016 May 11;7:11448. doi: 10.1038/ncomms11448. Nat Commun. 2016. PMID: 27165544 Free PMC article.