A holistic approach to marine eco-systems biology - PubMed (original) (raw)
. 2011 Oct;9(10):e1001177.
doi: 10.1371/journal.pbio.1001177. Epub 2011 Oct 18.
Silvia G Acinas, Peer Bork, Chris Bowler, Colomban De Vargas, Jeroen Raes, Matthew Sullivan, Detlev Arendt, Francesca Benzoni, Jean-Michel Claverie, Mick Follows, Gaby Gorsky, Pascal Hingamp, Daniele Iudicone, Olivier Jaillon, Stefanie Kandels-Lewis, Uros Krzic, Fabrice Not, Hiroyuki Ogata, Stéphane Pesant, Emmanuel Georges Reynaud, Christian Sardet, Michael E Sieracki, Sabrina Speich, Didier Velayoudon, Jean Weissenbach, Patrick Wincker; Tara Oceans Consortium
Collaborators, Affiliations
- PMID: 22028628
- PMCID: PMC3196472
- DOI: 10.1371/journal.pbio.1001177
A holistic approach to marine eco-systems biology
Eric Karsenti et al. PLoS Biol. 2011 Oct.
Abstract
The structure, robustness, and dynamics of ocean plankton ecosystems remain poorly understood due to sampling, analysis, and computational limitations. The Tara Oceans consortium organizes expeditions to help fill this gap at the global level.
Conflict of interest statement
The authors have declared that no competing interests exist.
Figures
Figure 1. The Tara Oceans cruise.
(A) Route of the Tara Oceans expedition. Sampling stations from surface to 1,000 m are carried out between ports of call guided by satellite data about the basin to sub-mesoscale structures. (B) Tara Oceans sampling sites in the Mozambique Channel and South Atlantic. The images show near real time sea surface height (SSH) from satellite. Each sampling station is indicated by a black diamond; those that are currently being targeted for priority studies are encircled by a white halo. The altimetry data is from September 16, 2011, when Tara was sampling inside an Agulhas ring. Several other rings are also apparent in the figure, as is the Malvinas Current off the Argentinean coast that injects cold Antarctic water into the resident waters.
Figure 2. The Tara Oceans model.
(A) Methods for sampling organisms by size classes and abundance. The blue background indicates the filtered volume required to obtain sufficient organism numbers for analysis. Actual volumes from which organisms are sampled are always recorded. (B) Methods for analyzing samples. Data on the right are from Tara Oceans sampling stations. (C) Models that will benefit from Tara Oceans data. High throughput genome sequencing and quantitative image analysis provide evolution, metabolic, and interaction data to build community metabolome maps, taxa/gene networks, and spatial ecosystem models.
References
- Karsenti E. Self-organization in cell biology: a brief history. Nat Rev Mol Cell Biol. 2008;9:255–262. - PubMed
- Keurentjes J. J, Angenent G. C, Dicke M, Santos V. A, Molenaar J, et al. Redefining plant systems biology: from cell to ecosystem. Trends Plant Sci. 2011;16:183–190. - PubMed
- Krakauer D. C, Collins J. P, Erwin D, Flack J. C, Fontana W, et al. The challenges and scope of theoretical biology. J Theor Biol. 2011;276:269–276. - PubMed
- Nédélec F, Surrey T, Karsenti E. Self-organisation and forces in the microtubule cytoskeleton. Curr Opon Cell Biol. 2003;15:118–124. - PubMed
- Raes J, Bork P. Molecular eco-systems biology: towards an understanding of community function. Nat Rev Microbiol. 2008;6:693–699. - PubMed
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