Electron cryotomography of vitrified cells with a Volta phase plate - PubMed (original) (raw)
. 2015 May;190(2):143-54.
doi: 10.1016/j.jsb.2015.03.004. Epub 2015 Mar 12.
Affiliations
- PMID: 25770733
- DOI: 10.1016/j.jsb.2015.03.004
Electron cryotomography of vitrified cells with a Volta phase plate
Yoshiyuki Fukuda et al. J Struct Biol. 2015 May.
Abstract
Electron cryotomography provides a means of studying the three dimensional structure of pleomorphic objects, such as organelles or cells, with a resolution of 1-3nm. A limitation in the study of radiation sensitive biological samples is the low signal-to-noise ratio of the tomograms which may obscure fine details. To overcome this limitation, the recently developed Volta phase plate (VPP) was applied in electron cryotomographic studies of a wide range of cellular structures, from magnetotactic bacteria to primary cultured neurons. The results show that the VPP improves contrast significantly and consequently the signal-to-noise ratio of the tomograms, moreover it avoids disturbing fringing artifacts typical for Zernike phase plates. The contrast improvement provided by the VPP was also confirmed in projection images of relatively thick (∼400nm) samples. In order to investigate the respective contributions of the VPP and the energy filter, images acquired with different combinations of the two were compared. Zero-loss energy filtering reduced the background noise in thicker areas of the sample and improved the contrast of features such as poly-β-hydroxybutyrate granules in magnetotactic bacteria, whereas the VPP provided an overall contrast improvement for all sample areas. After 3D reconstruction, tomograms acquired with the combination of a VPP and an energy filter showed structural features in neuronal processes with outstanding clarity. We also show that the VPP can be combined with focused ion beam milling to examine structures embedded deeply inside cells. Thus, we expect that VPP will become a standard element of the electron cryotomography workflow.
Keywords: Electron cryotomography; Focused ion beam; Phase contrast; Primary cultured neurons; Volta phase plate.
Copyright © 2015 Elsevier Inc. All rights reserved.
Similar articles
- Subtomogram analysis using the Volta phase plate.
Khoshouei M, Pfeffer S, Baumeister W, Förster F, Danev R. Khoshouei M, et al. J Struct Biol. 2017 Feb;197(2):94-101. doi: 10.1016/j.jsb.2016.05.009. Epub 2016 May 25. J Struct Biol. 2017. PMID: 27235783 - Dual-axis Volta phase plate cryo-electron tomography of Ebola virus-like particles reveals actin-VP40 interactions.
Winter SL, Chlanda P. Winter SL, et al. J Struct Biol. 2021 Jun;213(2):107742. doi: 10.1016/j.jsb.2021.107742. Epub 2021 May 8. J Struct Biol. 2021. PMID: 33971285 - A focused ion beam milling and lift-out approach for site-specific preparation of frozen-hydrated lamellas from multicellular organisms.
Mahamid J, Schampers R, Persoon H, Hyman AA, Baumeister W, Plitzko JM. Mahamid J, et al. J Struct Biol. 2015 Nov;192(2):262-9. doi: 10.1016/j.jsb.2015.07.012. Epub 2015 Jul 26. J Struct Biol. 2015. PMID: 26216184 - Imaging bacteria inside their host by cryo-focused ion beam milling and electron cryotomography.
Medeiros JM, Böck D, Pilhofer M. Medeiros JM, et al. Curr Opin Microbiol. 2018 Jun;43:62-68. doi: 10.1016/j.mib.2017.12.006. Epub 2017 Dec 29. Curr Opin Microbiol. 2018. PMID: 29291450 Review. - Cryo-electron tomography of cellular microtubules.
Koning RI. Koning RI. Methods Cell Biol. 2010;97:455-73. doi: 10.1016/S0091-679X(10)97024-6. Methods Cell Biol. 2010. PMID: 20719285 Review.
Cited by
- Are extraordinary nucleosome structures more ordinary than we thought?
Chong CYY, Gan L. Chong CYY, et al. Chromosoma. 2023 Sep;132(3):139-152. doi: 10.1007/s00412-023-00791-w. Epub 2023 Mar 14. Chromosoma. 2023. PMID: 36917245 Review. - Cellular and Structural Studies of Eukaryotic Cells by Cryo-Electron Tomography.
Weber MS, Wojtynek M, Medalia O. Weber MS, et al. Cells. 2019 Jan 16;8(1):57. doi: 10.3390/cells8010057. Cells. 2019. PMID: 30654455 Free PMC article. Review. - Isolation and Characterization of Metallosphaera Turreted Icosahedral Virus, a Founding Member of a New Family of Archaeal Viruses.
Wagner C, Reddy V, Asturias F, Khoshouei M, Johnson JE, Manrique P, Munson-McGee J, Baumeister W, Lawrence CM, Young MJ. Wagner C, et al. J Virol. 2017 Sep 27;91(20):e00925-17. doi: 10.1128/JVI.00925-17. Print 2017 Oct 15. J Virol. 2017. PMID: 28768871 Free PMC article. - How advances in cryo-electron tomography have contributed to our current view of bacterial cell biology.
Liedtke J, Depelteau JS, Briegel A. Liedtke J, et al. J Struct Biol X. 2022 Feb 26;6:100065. doi: 10.1016/j.yjsbx.2022.100065. eCollection 2022. J Struct Biol X. 2022. PMID: 35252838 Free PMC article. - Different functional states of fusion protein gB revealed on human cytomegalovirus by cryo electron tomography with Volta phase plate.
Si Z, Zhang J, Shivakoti S, Atanasov I, Tao CL, Hui WH, Zhou K, Yu X, Li W, Luo M, Bi GQ, Zhou ZH. Si Z, et al. PLoS Pathog. 2018 Dec 3;14(12):e1007452. doi: 10.1371/journal.ppat.1007452. eCollection 2018 Dec. PLoS Pathog. 2018. PMID: 30507948 Free PMC article.
MeSH terms
Substances
LinkOut - more resources
Full Text Sources
Other Literature Sources