An update on LNCipedia: a database for annotated human lncRNA sequences - PubMed (original) (raw)
Published Erratum
. 2015 Apr 30;43(8):4363-4.
doi: 10.1093/nar/gkv295. Epub 2015 Mar 31.
- PMID: 25829178
- PMCID: PMC4417186
- DOI: 10.1093/nar/gkv295
Published Erratum
An update on LNCipedia: a database for annotated human lncRNA sequences
P J Volders et al. Nucleic Acids Res. 2015.
No abstract available
Figures
Figure 1.
LNCipedia has grown substantially since its first release. The first version (41) was based on sequences and annotation from three different sources and was made available to the public in 2012. For the 2013 release of LNCipedia (unpublished), no additional sources were used, but the different sources were updated to the most recent version. For version 3.1 (3.0) of LNCipedia, both new sources were added and existing sources were updated.
Figure 4.
Transcripts with a likely coding potential are removed in the definition of a high-confidence set. Transcripts containing small open reading frames (25), translation initiation sites (24), PhyloCSF score greater than 41 or PSMs with an identification confidence higher than 90% are excluded.
Erratum for
- An update on LNCipedia: a database for annotated human lncRNA sequences.
Volders PJ, Verheggen K, Menschaert G, Vandepoele K, Martens L, Vandesompele J, Mestdagh P. Volders PJ, et al. Nucleic Acids Res. 2015 Jan;43(Database issue):D174-80. doi: 10.1093/nar/gku1060. Epub 2014 Nov 5. Nucleic Acids Res. 2015. PMID: 25378313 Free PMC article.
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