A comprehensive repertoire of prokaryotic species identified in human beings - PubMed (original) (raw)
Review
. 2015 Oct;15(10):1211-1219.
doi: 10.1016/S1473-3099(15)00293-5. Epub 2015 Aug 23.
Affiliations
- PMID: 26311042
- DOI: 10.1016/S1473-3099(15)00293-5
Review
A comprehensive repertoire of prokaryotic species identified in human beings
Perrine Hugon et al. Lancet Infect Dis. 2015 Oct.
Abstract
The compilation of the complete prokaryotic repertoire associated with human beings as commensals or pathogens is a major goal for the scientific and medical community. The use of bacterial culture techniques remains a crucial step to describe new prokaryotic species. The large number of officially acknowledged bacterial species described since 1980 and the recent increase in the number of recognised pathogenic species have highlighted the absence of an exhaustive compilation of species isolated in human beings. By means of a thorough investigation of several large culture databases and a search of the scientific literature, we built an online database containing all human-associated prokaryotic species described, whether or not they had been validated and have standing in nomenclature. We list 2172 species that have been isolated in human beings. They were classified in 12 different phyla, mostly in the Proteobacteria, Firmicutes, Actinobacteria, and Bacteroidetes phyla. Our online database is useful for both clinicians and microbiologists and forms part of the Human Microbiome Project, which aims to characterise the whole human microbiota and help improve our understanding of the human predisposition and susceptibility to infectious agents.
Copyright © 2015 Elsevier Ltd. All rights reserved.
Similar articles
- The contribution of culturomics to the repertoire of isolated human bacterial and archaeal species.
Bilen M, Dufour JC, Lagier JC, Cadoret F, Daoud Z, Dubourg G, Raoult D. Bilen M, et al. Microbiome. 2018 May 24;6(1):94. doi: 10.1186/s40168-018-0485-5. Microbiome. 2018. PMID: 29793532 Free PMC article. Review. - Repertoire of human breast and milk microbiota: a systematic review.
Togo A, Dufour JC, Lagier JC, Dubourg G, Raoult D, Million M. Togo A, et al. Future Microbiol. 2019 May;14:623-641. doi: 10.2217/fmb-2018-0317. Epub 2019 Apr 26. Future Microbiol. 2019. PMID: 31025880 - Diversity of endodontic microbiota revisited.
Siqueira JF Jr, Rôças IN. Siqueira JF Jr, et al. J Dent Res. 2009 Nov;88(11):969-81. doi: 10.1177/0022034509346549. J Dent Res. 2009. PMID: 19828883 Review. - The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition.
Boucias DG, Cai Y, Sun Y, Lietze VU, Sen R, Raychoudhury R, Scharf ME. Boucias DG, et al. Mol Ecol. 2013 Apr;22(7):1836-53. doi: 10.1111/mec.12230. Epub 2013 Feb 4. Mol Ecol. 2013. PMID: 23379767 - Human Bacterial Repertoire of the Urinary Tract: a Potential Paradigm Shift.
Morand A, Cornu F, Dufour JC, Tsimaratos M, Lagier JC, Raoult D. Morand A, et al. J Clin Microbiol. 2019 Feb 27;57(3):e00675-18. doi: 10.1128/JCM.00675-18. Print 2019 Mar. J Clin Microbiol. 2019. PMID: 30404941 Free PMC article. Review.
Cited by
- Cardiovascular Disease May Be Triggered by Gut Microbiota, Microbial Metabolites, Gut Wall Reactions, and Inflammation.
Dicks LMT. Dicks LMT. Int J Mol Sci. 2024 Oct 2;25(19):10634. doi: 10.3390/ijms251910634. Int J Mol Sci. 2024. PMID: 39408963 Free PMC article. Review. - Bacterial communities in the digester bed and liquid effluent of a microflush composting toilet system.
Williams LE, Kleinschmidt CE, Mecca S. Williams LE, et al. PeerJ. 2018 Dec 6;6:e6077. doi: 10.7717/peerj.6077. eCollection 2018. PeerJ. 2018. PMID: 30564526 Free PMC article. - Diet in Irritable Bowel Syndrome (IBS): Interaction with Gut Microbiota and Gut Hormones.
El-Salhy M, Hatlebakk JG, Hausken T. El-Salhy M, et al. Nutrients. 2019 Aug 7;11(8):1824. doi: 10.3390/nu11081824. Nutrients. 2019. PMID: 31394793 Free PMC article. Review. - Genome and pan-genome analysis to classify emerging bacteria.
Caputo A, Fournier PE, Raoult D. Caputo A, et al. Biol Direct. 2019 Feb 26;14(1):5. doi: 10.1186/s13062-019-0234-0. Biol Direct. 2019. PMID: 30808378 Free PMC article. Review. - Methods in microbiome research: Past, present, and future.
Gotschlich EC, Colbert RA, Gill T. Gotschlich EC, et al. Best Pract Res Clin Rheumatol. 2019 Dec;33(6):101498. doi: 10.1016/j.berh.2020.101498. Epub 2020 Apr 24. Best Pract Res Clin Rheumatol. 2019. PMID: 32340923 Free PMC article. Review.
Publication types
MeSH terms
LinkOut - more resources
Full Text Sources
Medical