A time- and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y - PubMed (original) (raw)

• The complete sequence and comparative analysis of ape sex chromosomes.
  Makova KD, Pickett BD, Harris RS, Hartley GA, Cechova M, Pal K, Nurk S, Yoo D, Li Q, Hebbar P, McGrath BC, Antonacci F, Aubel M, Biddanda A, Borchers M, Bornberg-Bauer E, Bouffard GG, Brooks SY, Carbone L, Carrel L, Carroll A, Chang PC, Chin CS, Cook DE, Craig SJC, de Gennaro L, Diekhans M, Dutra A, Garcia GH, Grady PGS, Green RE, Haddad D, Hallast P, Harvey WT, Hickey G, Hillis DA, Hoyt SJ, Jeong H, Kamali K, Pond SLK, LaPolice TM, Lee C, Lewis AP, Loh YE, Masterson P, McGarvey KM, McCoy RC, Medvedev P, Miga KH, Munson KM, Pak E, Paten B, Pinto BJ, Potapova T, Rhie A, Rocha JL, Ryabov F, Ryder OA, Sacco S, Shafin K, Shepelev VA, Slon V, Solar SJ, Storer JM, Sudmant PH, Sweetalana, Sweeten A, Tassia MG, Thibaud-Nissen F, Ventura M, Wilson MA, Young AC, Zeng H, Zhang X, Szpiech ZA, Huber CD, Gerton JL, Yi SV, Schatz MC, Alexandrov IA, Koren S, O'Neill RJ, Eichler EE, Phillippy AM. Makova KD, et al. Nature. 2024 Jun;630(8016):401-411. doi: 10.1038/s41586-024-07473-2. Epub 2024 May 29. Nature. 2024. PMID: 38811727 Free PMC article.
• Dynamic evolution of great ape Y chromosomes.
  Cechova M, Vegesna R, Tomaszkiewicz M, Harris RS, Chen D, Rangavittal S, Medvedev P, Makova KD. Cechova M, et al. Proc Natl Acad Sci U S A. 2020 Oct 20;117(42):26273-26280. doi: 10.1073/pnas.2001749117. Epub 2020 Oct 5. Proc Natl Acad Sci U S A. 2020. PMID: 33020265 Free PMC article.
• A Y-chromosomal DNA fragment is conserved in human and chimpanzee.
  Rasheed BK, Whisenant EC, Fernandez R, Ostrer H, Bhatnagar YM. Rasheed BK, et al. Mol Biol Evol. 1991 Jul;8(4):416-32. doi: 10.1093/oxfordjournals.molbev.a040663. Mol Biol Evol. 1991. PMID: 1840631
• The Y chromosomes of the great apes.
  Hallast P, Jobling MA. Hallast P, et al. Hum Genet. 2017 May;136(5):511-528. doi: 10.1007/s00439-017-1769-8. Epub 2017 Mar 6. Hum Genet. 2017. PMID: 28265767 Review.
• Y and W Chromosome Assemblies: Approaches and Discoveries.
  Tomaszkiewicz M, Medvedev P, Makova KD. Tomaszkiewicz M, et al. Trends Genet. 2017 Apr;33(4):266-282. doi: 10.1016/j.tig.2017.01.008. Epub 2017 Feb 22. Trends Genet. 2017. PMID: 28236503 Review.