MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy - PubMed (original) (raw)
MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy
Shawn Q Zheng et al. Nat Methods. 2017 Apr.
No abstract available
Conflict of interest statement
Competing Financial Interests:
The autors decalre no competing financial interest.
Figures
Figure 1. Local motion correction by MotionCor2
(a) Schematic drawing illustrates that, when the sample is tilted, the observable motions in the image plan is the projection of z-motion produced by doming of the sample under electron beam. (b) Image of frozen hydrated archaeal 20S proteasome overlaid with the traces of global motion based upon whole frame alignment (long trace originated from the center of image) and each patch predicted from the polynomial function. (c) Fourier Shell Correlation (FSC) curves of 3D reconstructions determined using micrographs corrected by Unblur with dose weighting, Unblur followed by particle polishing, correction by MotionCor2 with dose-weighting, MotionCor2 followed by particle polishing and MotionCor2 with per-frame B-factor weighting. The color code is marked in the figure. (d) 3D reconstruction of archaeal 20S proteasome filtered to 2.5Å resolution and sharpened by a temperature factor of –103.8Å2. (e) Density of a β-sheet, where the main chain carbonyl is colored in red. Visualization of main chain carbonyl density requires better a resolution that is better than 3Å. (f) Representative side chain densities.
Similar articles
- Single-particle electron cryomicroscopy.
Doerr A. Doerr A. Nat Methods. 2014 Jan;11(1):30. doi: 10.1038/nmeth.2779. Nat Methods. 2014. PMID: 24524139 No abstract available. - Cryo-electron microscopy for structural biology: current status and future perspectives.
Wang H. Wang H. Sci China Life Sci. 2015 Aug;58(8):750-6. doi: 10.1007/s11427-015-4851-2. Epub 2015 Apr 19. Sci China Life Sci. 2015. PMID: 25894285 Review. - 2.8 Å resolution reconstruction of the Thermoplasma acidophilum 20S proteasome using cryo-electron microscopy.
Campbell MG, Veesler D, Cheng A, Potter CS, Carragher B. Campbell MG, et al. Elife. 2015 Mar 11;4:e06380. doi: 10.7554/eLife.06380. Elife. 2015. PMID: 25760083 Free PMC article. - Alignment of direct detection device micrographs using a robust Optical Flow approach.
Abrishami V, Vargas J, Li X, Cheng Y, Marabini R, Sorzano CÓ, Carazo JM. Abrishami V, et al. J Struct Biol. 2015 Mar;189(3):163-76. doi: 10.1016/j.jsb.2015.02.001. Epub 2015 Feb 12. J Struct Biol. 2015. PMID: 25681631 - Single-particle cryo-electron microscopy of macromolecular complexes.
Skiniotis G, Southworth DR. Skiniotis G, et al. Microscopy (Oxf). 2016 Feb;65(1):9-22. doi: 10.1093/jmicro/dfv366. Epub 2015 Nov 25. Microscopy (Oxf). 2016. PMID: 26611544 Free PMC article. Review.
Cited by
- A conserved arginine residue is critical for stabilizing the N2 FeS cluster in mitochondrial complex I.
Hameedi MA, Grba DN, Richardson KH, Jones AJY, Song W, Roessler MM, Wright JJ, Hirst J. Hameedi MA, et al. J Biol Chem. 2021 Jan-Jun;296:100474. doi: 10.1016/j.jbc.2021.100474. Epub 2021 Feb 26. J Biol Chem. 2021. PMID: 33640456 Free PMC article. - Rapid tilt-series method for cryo-electron tomography: Characterizing stage behavior during FISE acquisition.
Chreifi G, Chen S, Jensen GJ. Chreifi G, et al. J Struct Biol. 2021 Jun;213(2):107716. doi: 10.1016/j.jsb.2021.107716. Epub 2021 Mar 11. J Struct Biol. 2021. PMID: 33713788 Free PMC article. - The final step of 40S ribosomal subunit maturation is controlled by a dual key lock.
Plassart L, Shayan R, Montellese C, Rinaldi D, Larburu N, Pichereaux C, Froment C, Lebaron S, O'Donohue MF, Kutay U, Marcoux J, Gleizes PE, Plisson-Chastang C. Plassart L, et al. Elife. 2021 Apr 28;10:e61254. doi: 10.7554/eLife.61254. Elife. 2021. PMID: 33908345 Free PMC article. - 3D architecture and structural flexibility revealed in the subfamily of large glutamate dehydrogenases by a mycobacterial enzyme.
Lázaro M, Melero R, Huet C, López-Alonso JP, Delgado S, Dodu A, Bruch EM, Abriata LA, Alzari PM, Valle M, Lisa MN. Lázaro M, et al. Commun Biol. 2021 Jun 3;4(1):684. doi: 10.1038/s42003-021-02222-x. Commun Biol. 2021. PMID: 34083757 Free PMC article. - Structure and mechanism of Mycobacterium smegmatis polynucleotide phosphorylase.
Unciuleac MC, Ghosh S, de la Cruz MJ, Goldgur Y, Shuman S. Unciuleac MC, et al. RNA. 2021 Jun 4;27(8):959-69. doi: 10.1261/rna.078822.121. Online ahead of print. RNA. 2021. PMID: 34088850 Free PMC article.
References
Publication types
MeSH terms
Substances
Grants and funding
- T32 GM008284/GM/NIGMS NIH HHS/United States
- R01 GM031627/GM/NIGMS NIH HHS/United States
- P01 GM111126/GM/NIGMS NIH HHS/United States
- P50 GM082250/GM/NIGMS NIH HHS/United States
- R35 GM118099/GM/NIGMS NIH HHS/United States
- R01 GM082893/GM/NIGMS NIH HHS/United States
- R01 GM098672/GM/NIGMS NIH HHS/United States
LinkOut - more resources
Full Text Sources
Other Literature Sources