The Chloroplast Genome of Passiflora edulis (Passifloraceae) Assembled from Long Sequence Reads: Structural Organization and Phylogenomic Studies in Malpighiales - PubMed (original) (raw)

FIGURE 6

Phylogenetic tree of the Fabids clade inferred from the nucleotide sequences of cp protein-coding genes of 43 plant species. Both maximum likelihood and BI were applied to the GTR + G model. The bootstrap values for maximum likelihood and posterior probability for BI are indicated above each node; a dash indicates that the support nodes obtained were <50% or <0.50. V. vinifera was used as outgroup to produce a rooted tree. The scale bar indicates the number of nucleotide substitutions per site. Protein-coding genes used in the analysis: atpA, atpB, atpE, atpH, atpI, ccsA, cemA, matK, ndhC, ndhE, ndhF, ndhG, ndhH, ndhI, ndhJ, ndhK, petA, petG, petL, petN, psaA, psaB, psaC, psaJ, psbA, psbC, psbD, psbE, psbF, psbI, psbJ, psbK, rbcL, rpl14, rpl36, rpoB, rpoC2, rps11, rps14, rps2, rps3, rps4, rps8.