Molecular definitions of autophagy and related processes - PubMed (original) (raw)
Review
. 2017 Jul 3;36(13):1811-1836.
doi: 10.15252/embj.201796697. Epub 2017 Jun 8.
Eric H Baehrecke 3, Andrea Ballabio 4 5 6 7, Patricia Boya 8, José Manuel Bravo-San Pedro 2 9 10 11 12, Francesco Cecconi 13 14 15, Augustine M Choi 16, Charleen T Chu 17, Patrice Codogno 2 18 19 20, Maria Isabel Colombo 21 22, Ana Maria Cuervo 23, Jayanta Debnath 24, Vojo Deretic 25, Ivan Dikic 26 27 28, Eeva-Liisa Eskelinen 29, Gian Maria Fimia [ 30](#full-view-affiliation-30 "National Institute for Infectious Diseases "L. Spallanzani" IRCCS, Rome, Italy.") 31, Simone Fulda 32 33 34, David A Gewirtz 35 36, Douglas R Green 37, Malene Hansen 38, J Wade Harper 39, Marja Jäättelä 40, Terje Johansen 41, Gabor Juhasz 42 43, Alec C Kimmelman 44, Claudine Kraft 45, Nicholas T Ktistakis 46, Sharad Kumar 47, Beth Levine 48 49, Carlos Lopez-Otin 50 51, Frank Madeo 52 53, Sascha Martens 45, Jennifer Martinez 54, Alicia Melendez 55 56, Noboru Mizushima 57, Christian Münz 58, Leon O Murphy 59, Josef M Penninger 60, Mauro Piacentini 13 [ 30](#full-view-affiliation-30 "National Institute for Infectious Diseases "L. Spallanzani" IRCCS, Rome, Italy."), Fulvio Reggiori 61, David C Rubinsztein 62, Kevin M Ryan 63, Laura Santambrogio 64, Luca Scorrano 65 66, Anna Katharina Simon 67 68, Hans-Uwe Simon 69, Anne Simonsen 70, Nektarios Tavernarakis 71 72, Sharon A Tooze 73, Tamotsu Yoshimori 74 75, Junying Yuan 39 76, Zhenyu Yue 77, Qing Zhong 48, Guido Kroemer 2 9 10 11 12 78 79
Affiliations
- PMID: 28596378
- PMCID: PMC5494474
- DOI: 10.15252/embj.201796697
Review
Molecular definitions of autophagy and related processes
Lorenzo Galluzzi et al. EMBO J. 2017.
Abstract
Over the past two decades, the molecular machinery that underlies autophagic responses has been characterized with ever increasing precision in multiple model organisms. Moreover, it has become clear that autophagy and autophagy-related processes have profound implications for human pathophysiology. However, considerable confusion persists about the use of appropriate terms to indicate specific types of autophagy and some components of the autophagy machinery, which may have detrimental effects on the expansion of the field. Driven by the overt recognition of such a potential obstacle, a panel of leading experts in the field attempts here to define several autophagy-related terms based on specific biochemical features. The ultimate objective of this collaborative exchange is to formulate recommendations that facilitate the dissemination of knowledge within and outside the field of autophagy research.
Keywords: LC3‐associated phagocytosis; chaperone‐mediated autophagy; microautophagy; mitophagy; xenophagy.
© 2017 The Authors.
Figures
Figure 1. Autophagy substrates
A wide and heterogeneous set of cytoplasmic entities—be they of endogenous/intracellular or exogenous/extracellular origin—can be targeted to lysosomal degradation by non‐selective or selective forms of autophagy.
ER
, endoplasmic reticulum.
Similar articles
- Autophagy during ageing - from Dr Jekyll to Mr Hyde.
Wilhelm T, Richly H. Wilhelm T, et al. FEBS J. 2018 Jul;285(13):2367-2376. doi: 10.1111/febs.14453. Epub 2018 Apr 16. FEBS J. 2018. PMID: 29630766 Review. - Autophagy and cell death in model organisms.
Kourtis N, Tavernarakis N. Kourtis N, et al. Cell Death Differ. 2009 Jan;16(1):21-30. doi: 10.1038/cdd.2008.120. Epub 2008 Aug 22. Cell Death Differ. 2009. PMID: 19079286 Review. - Autophagy and innate immunity: Insights from invertebrate model organisms.
Kuo CJ, Hansen M, Troemel E. Kuo CJ, et al. Autophagy. 2018;14(2):233-242. doi: 10.1080/15548627.2017.1389824. Epub 2018 Feb 17. Autophagy. 2018. PMID: 29130360 Free PMC article. Review. - Dictyostelium discoideum and autophagy - a perfect pair.
Fischer S, Eichinger L. Fischer S, et al. Int J Dev Biol. 2019;63(8-9-10):485-495. doi: 10.1387/ijdb.190186LE. Int J Dev Biol. 2019. PMID: 31840786 Review. - Can autophagy promote longevity?
Madeo F, Tavernarakis N, Kroemer G. Madeo F, et al. Nat Cell Biol. 2010 Sep;12(9):842-6. doi: 10.1038/ncb0910-842. Nat Cell Biol. 2010. PMID: 20811357
Cited by
- Centrosome-phagy: implications for human diseases.
Wu Q, Yu X, Liu L, Sun S, Sun S. Wu Q, et al. Cell Biosci. 2021 Mar 4;11(1):49. doi: 10.1186/s13578-021-00557-w. Cell Biosci. 2021. PMID: 33663596 Free PMC article. Review. - The Role of P4HB and SOX4 in Prostatic Carcinoma and Their Clinical Significance.
Dawoud MM, Elkady N, Abdelmoneum RA, Ghonaimy AS, Allam DM. Dawoud MM, et al. Iran J Pathol. 2024 Spring;19(2):225-235. doi: 10.30699/IJP.2024.2017851.3227. Epub 2024 Feb 15. Iran J Pathol. 2024. PMID: 39118797 Free PMC article. - Reduced endosomal microautophagy activity in aging associates with enhanced exocyst-mediated protein secretion.
Krause GJ, Diaz A, Jafari M, Khawaja RR, Agullo-Pascual E, Santiago-Fernández O, Richards AL, Chen KH, Dmitriev P, Sun Y, See SK, Abdelmohsen K, Mazan-Mamczarz K, Krogan NJ, Gorospe M, Swaney DL, Sidoli S, Bravo-Cordero JJ, Kampmann M, Cuervo AM. Krause GJ, et al. Aging Cell. 2022 Oct;21(10):e13713. doi: 10.1111/acel.13713. Epub 2022 Sep 18. Aging Cell. 2022. PMID: 36116133 Free PMC article. - The Link between Chronic Stress and Accelerated Aging.
Yegorov YE, Poznyak AV, Nikiforov NG, Sobenin IA, Orekhov AN. Yegorov YE, et al. Biomedicines. 2020 Jul 7;8(7):198. doi: 10.3390/biomedicines8070198. Biomedicines. 2020. PMID: 32645916 Free PMC article. Review. - Progress in preclinical studies of macrophage autophagy in the regulation of ALI/ARDS.
Liu C, Xiao K, Xie L. Liu C, et al. Front Immunol. 2022 Aug 18;13:922702. doi: 10.3389/fimmu.2022.922702. eCollection 2022. Front Immunol. 2022. PMID: 36059534 Free PMC article. Review.
References
- Al Rawi S, Louvet‐Vallee S, Djeddi A, Sachse M, Culetto E, Hajjar C, Boyd L, Legouis R, Galy V (2011) Postfertilization autophagy of sperm organelles prevents paternal mitochondrial DNA transmission. Science 334: 1144–1147 - PubMed
- Amaya C, Fader CM, Colombo MI (2015) Autophagy and proteins involved in vesicular trafficking. FEBS Lett 589: 3343–3353 - PubMed
- Antonioli M, Di Rienzo M, Piacentini M, Fimia GM (2016) Emerging mechanisms in initiating and terminating autophagy. Trends Biochem Sci 42: 28–41 - PubMed
Publication types
MeSH terms
Grants and funding
- R01 GM116908/GM/NIGMS NIH HHS/United States
- W 1261/FWF_/Austrian Science Fund FWF/Austria
- P30 DK041296/DK/NIDDK NIH HHS/United States
- BBS/E/B/000C0413/BB_/Biotechnology and Biological Sciences Research Council/United Kingdom
- R15 GM102846/GM/NIGMS NIH HHS/United States
- 22903/CRUK_/Cancer Research UK/United Kingdom
- R01 AG045223/AG/NIA NIH HHS/United States
- P20 GM121176/GM/NIGMS NIH HHS/United States
- R01 AI146180/AI/NIAID NIH HHS/United States
- R01 AI137198/AI/NIAID NIH HHS/United States
- R01 AG038664/AG/NIA NIH HHS/United States
- BBS/E/B/000C0417/BB_/Biotechnology and Biological Sciences Research Council/United Kingdom
- R37 AG021904/AG/NIA NIH HHS/United States
- BB/H000631/1/BB_/Biotechnology and Biological Sciences Research Council/United Kingdom
- R37 AI042999/AI/NIAID NIH HHS/United States
- BB/K019155/1/BB_/Biotechnology and Biological Sciences Research Council/United Kingdom
- RF1 AG054108/AG/NIA NIH HHS/United States
- 15816/CRUK_/Cancer Research UK/United Kingdom
- P30 AG038072/AG/NIA NIH HHS/United States
- R01 GM117466/GM/NIGMS NIH HHS/United States
- P01 AG031782/AG/NIA NIH HHS/United States
- P01 HL114501/HL/NHLBI NIH HHS/United States
- R01 AI040646/AI/NIAID NIH HHS/United States
LinkOut - more resources
Full Text Sources
Other Literature Sources
Molecular Biology Databases
Miscellaneous