Discovery of a Highly Divergent Coronavirus in the Asian House Shrew from China Illuminates the Origin of the Alphacoronaviruses - PubMed (original) (raw)
Maximum-likelihood phylogenetic trees of the amino acid sequences of the putative RdRp protein. (A) WESV and other coronaviruses. (B) WESV and other alphacoronaviruses. (C) WESV only. The asterisks indicate well-supported nodes (>70% bootstrap support). The scale bars indicate the numbers of amino acid substitutions per site. The virus genomes used in this study and their GenBank accession numbers are as follows: AlpacaCoV, alpaca respiratory coronavirus isolate CA08-1/2008 (
JQ410000
); BatCoV CDPHE15, bat coronavirus CDPHE15/USA/2006 (
KF430219
); BatCoV FJ2012, BtMf-AlphaCoV/FJ2012 (
KJ473799
); BatCoV YN2012, BtRf-AlphaCoV/YN2012 (
KJ473808
); BatCoV HuB2013, BtRf-AlphaCoV/HuB2013 (
KJ473807
); CamelCoV, camel alphacoronavirus isolate camel/Riyadh/Ry141/2015 (
KT368907
); CCoV K378, canine coronavirus strain K378 (
KC175340
); FCoV C1Je, feline coronavirus strain FCoV C1Je (
DQ848678
); BatCoV HKU2, bat coronavirus HKU2 strain HKU2/GD/430/2006 (
EF203064
); BatCoV HKU8, bat coronavirus HKU8 strain AFCD77 (
EU420139
); HCoV-229E, human coronavirus 229E (
AF304460
); HCoV-NL63, human coronavirus NL63 (
AY567487
); BatCoV JTAC2, bat coronavirus JTAC2 (
KU182966
); LRNV, Lucheng Rn rat coronavirus isolate Lucheng-19 (
KF294380
); BatCoV 1A, bat coronavirus 1A strain AFCD62 (
EU420138
); MCoV, mink coronavirus strain WD1127 (
HM245925
); PEDV, porcine epidemic diarrhea virus isolate ZJU/G1/2013 (
KU664503
); BatCoV HKU10, Rousettus bat coronavirus HKU10 isolate 183A (
JQ989270
); BatCoV SAX2011, BtMr-AlphaCoV/SAX2011 (
KJ473806
); BtCoV/512/2005, Scotophilus bat coronavirus 512 (
DQ648858
); TGEV, transmissible gastroenteritis virus virulent Purdue (
DQ811789
); BatCoV Zhejiang2013, bat Hp-betacoronavirus/Zhejiang2013 (
KF636752
); MERS-CoV, human betacoronavirus 2c EMC/2012 (
JX869059
); HCoV-HKU1, human coronavirus HKU1 (
AY597011
); BatCoV HKU9, bat coronavirus HKU9 (
EF065513
); SARS-CoV, SARS coronavirus WH20 (
AY772062
); BuCoV HKU11, bulbul coronavirus HKU11-934 (
FJ376619
); PorCoV HKU15, porcine coronavirus HKU15 strain HKU15-44 (
JQ065042
); MRCoV HKU18, magpie-robin coronavirus HKU18 strain HKU18-chu3 (
JQ065046
); WiCoV HKU20, wigeon coronavirus HKU20 strain HKU20-9243 (
JQ065048
); AIBV-Beaudette, avian infectious bronchitis virus Beaudette (
NC_001451
); DKCoV, duck coronavirus isolate DK/CH/HN/ZZ2004 (
JF705860
); BWCoV SW1, beluga whale coronavirus SW1 (
EU111742
); TCoV, turkey coronavirus isolate TCoV-ATCC (
EU022526
).