Large-scale ruminant genome sequencing provides insights into their evolution and distinct traits - PubMed (original) (raw)

• A genome survey sequencing of the Java mouse deer (Tragulus javanicus) adds new aspects to the evolution of lineage specific retrotransposons in Ruminantia (Cetartiodactyla).
  Gallus S, Kumar V, Bertelsen MF, Janke A, Nilsson MA. Gallus S, et al. Gene. 2015 Oct 25;571(2):271-8. doi: 10.1016/j.gene.2015.06.064. Epub 2015 Jun 27. Gene. 2015. PMID: 26123917
• Genomic insights into ruminant evolution: from past to future prospects.
  Wang B, Chen L, Wang W. Wang B, et al. Zool Res. 2019 Nov 18;40(6):476-487. doi: 10.24272/j.issn.2095-8137.2019.061. Zool Res. 2019. PMID: 31592581 Free PMC article. Review.
• Ruminant-specific multiple duplication events of PRDM9 before speciation.
  Padhi A, Shen B, Jiang J, Zhou Y, Liu GE, Ma L. Padhi A, et al. BMC Evol Biol. 2017 Mar 14;17(1):79. doi: 10.1186/s12862-017-0892-4. BMC Evol Biol. 2017. PMID: 28292260 Free PMC article.
• Organization of the Addax Major Histocompatibility Complex Provides Insights Into Ruminant Evolution.
  Li C, Huang R, Nie F, Li J, Zhu W, Shi X, Guo Y, Chen Y, Wang S, Zhang L, Chen L, Li R, Liu X, Zheng C, Zhang C, Ma RZ. Li C, et al. Front Immunol. 2020 Feb 25;11:260. doi: 10.3389/fimmu.2020.00260. eCollection 2020. Front Immunol. 2020. PMID: 32161588 Free PMC article.
• The Ruminant Telomere-to-Telomere (RT2T) Consortium.
  Kalbfleisch TS, McKay SD, Murdoch BM, Adelson DL, Almansa-Villa D, Becker G, Beckett LM, Benítez-Galeano MJ, Biase F, Casey T, Chuong E, Clark E, Clarke S, Cockett N, Couldrey C, Davis BW, Elsik CG, Faraut T, Gao Y, Genet C, Grady P, Green J, Green R, Guan D, Hagen D, Hartley GA, Heaton M, Hoyt SJ, Huang W, Jarvis E, Kalleberg J, Khatib H, Koepfi KP, Koltes J, Koren S, Kuehn C, Leeb T, Leonard A, Liu GE, Low WY, McConnell H, McRae K, Miga K, Mousel M, Neibergs H, Olagunju T, Pennell M, Petry B, Pewsner M, Phillippy AM, Pickett BD, Pineda P, Potapova T, Rachagani S, Rhie A, Rijnkels M, Robic A, Rodriguez Osorio N, Safonova Y, Schettini G, Schnabel RD, Sirpu Natesh N, Stegemiller M, Storer J, Stothard P, Stull C, Tosser-Klopp G, Traglia GM, Tuggle CK, Van Tassell CP, Watson C, Weikard R, Wimmers K, Xie S, Yang L, Smith TPL, O'Neill RJ, Rosen BD. Kalbfleisch TS, et al. Nat Genet. 2024 Aug;56(8):1566-1573. doi: 10.1038/s41588-024-01835-2. Epub 2024 Aug 5. Nat Genet. 2024. PMID: 39103649 Review.