Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents - PubMed (original) (raw)

Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents

T Ikemura et al. Cold Spring Harb Symp Quant Biol. 1983.

No abstract available

PubMed Disclaimer

Similar articles

• Markedly unbiased codon usage in Bacillus subtilis.
  Ogasawara N. Ogasawara N. Gene. 1985;40(1):145-50. doi: 10.1016/0378-1119(85)90035-6. Gene. 1985. PMID: 3937765
• How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?
  Xia X. Xia X. Genetics. 1998 May;149(1):37-44. doi: 10.1093/genetics/149.1.37. Genetics. 1998. PMID: 9584084 Free PMC article.
• Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity.
  Sharp PM, Cowe E, Higgins DG, Shields DC, Wolfe KH, Wright F. Sharp PM, et al. Nucleic Acids Res. 1988 Sep 12;16(17):8207-11. doi: 10.1093/nar/16.17.8207. Nucleic Acids Res. 1988. PMID: 3138659 Free PMC article. Review.
• Codon usage and tRNA content in unicellular and multicellular organisms.
  Ikemura T. Ikemura T. Mol Biol Evol. 1985 Jan;2(1):13-34. doi: 10.1093/oxfordjournals.molbev.a040335. Mol Biol Evol. 1985. PMID: 3916708 Review.

Cited by

• Large-scale duplication events underpin population-level flexibility in tRNA gene copy number in Pseudomonas fluorescens SBW25.
  Khomarbaghi Z, Ngan WY, Ayan GB, Lim S, Dechow-Seligmann G, Nandy P, Gallie J. Khomarbaghi Z, et al. Nucleic Acids Res. 2024 Mar 21;52(5):2446-2462. doi: 10.1093/nar/gkae049. Nucleic Acids Res. 2024. PMID: 38296823 Free PMC article.
• SARS-CoV-2 continuously optimizes its codon usage to adapt to human lung environment.
  Wang Y, Li Z, Wang X, Jiang W, Jiang W. Wang Y, et al. J Appl Genet. 2023 Dec;64(4):831-837. doi: 10.1007/s13353-023-00790-8. Epub 2023 Sep 23. J Appl Genet. 2023. PMID: 37740828
• The Role of Codon Usage, tRNA Availability, and Cell Proliferation in EBV Latency and (Re)Activation.
  Kanduc D. Kanduc D. Glob Med Genet. 2022 Sep 15;9(3):219-225. doi: 10.1055/s-0042-1751301. eCollection 2022 Sep. Glob Med Genet. 2022. PMID: 36118264 Free PMC article.
• Synonymous mutations that regulate translation speed might play a non-negligible role in liver cancer development.
  Li Q, Li J, Yu CP, Chang S, Xie LL, Wang S. Li Q, et al. BMC Cancer. 2021 Apr 9;21(1):388. doi: 10.1186/s12885-021-08131-w. BMC Cancer. 2021. PMID: 33836673 Free PMC article.
• SARS-CoV-2 has the advantage of competing the iMet-tRNAs with human hosts to allow efficient translation.
  Wang Y, Gai Y, Li Y, Li C, Li Z, Wang X. Wang Y, et al. Mol Genet Genomics. 2021 Jan;296(1):113-118. doi: 10.1007/s00438-020-01731-4. Epub 2020 Oct 10. Mol Genet Genomics. 2021. PMID: 33040198 Free PMC article.

Publication types

MeSH terms

Substances

LinkOut - more resources

• Full Text Sources

  • HighWire

• Other Literature Sources

  • The Lens - Patent Citations Database

• Medical

  • MedlinePlus Health Information